View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_9 (Length: 589)
Name: NF7321_low_9
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 28219030 - 28219491
Alignment:
| Q |
19 |
catatacctatattgggtataaattcctgtttggcctggctgtatcccaatatcttctattaggatactgttttctgataatttctagacattttatgtt |
118 |
Q |
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| T |
28219030 |
catatacctatattgggtataaattcctgtttggcctggctgtatcccaatatcttctattaggatactgttttctgataatttctagacattttatgtt |
28219129 |
T |
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| Q |
119 |
tatgtgaatcttgatattgtgatttgtaacattgcagcttttagaagagcttaataatgaaggcttgagagccgatgttaatggtggtatgtaattttat |
218 |
Q |
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| T |
28219130 |
tatgcgaatcttgatattgtgatttgtaacattgcagcttttagaagagcttaataatgaaggcttgagagccgatgttaatggtggtatgtaattttat |
28219229 |
T |
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| Q |
219 |
acttgaacaatcccgttttatacttgtcgttaaaagtgattttgataaattgtttggtaacagagtggagtggaacttcccttggaaactccgttacgct |
318 |
Q |
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| T |
28219230 |
acttgaacaatcccgttttatatttgtcgttaaaagtgattttaataaattgtttggtagcagagaggagtggaacttcccttggaaactccgttacgct |
28219329 |
T |
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| Q |
319 |
tttcagatcatcgttcttggaacctttacaaaaagccagcaaggtatgaaacattttaaaattgtttctatagtaaattatgatcaaacagattttattt |
418 |
Q |
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| T |
28219330 |
tttcagatcatcgttcttagaacctttacaaaaaggcagcaaggtatgaaacatttcaaaattgtttctatagtaaattctgatcaaacagattttattt |
28219429 |
T |
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| Q |
419 |
tattttatatgagaatgctaaaaaccgcgattcctttgcttttcatttaaaccagcacaaat |
480 |
Q |
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| T |
28219430 |
tattttatgtgagaatgctaaaaaccgcgattcctttgtttttcatttaaacatgcacaaat |
28219491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 495 - 583
Target Start/End: Original strand, 28219586 - 28219674
Alignment:
| Q |
495 |
atttttagtgtccattaacctaattatgttgatgctgctattgttaataatttgataatactaacataaatgagattcagtattatcta |
583 |
Q |
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| T |
28219586 |
atttttagtgtccattaacctaattatgttgatgctgctattgttaataatttgataatactaacataaatgagattcagtagtatcta |
28219674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 242 - 468
Target Start/End: Complemental strand, 27947252 - 27947031
Alignment:
| Q |
242 |
ttgtcgttaaaagtgattttgataaattgtttggtaacagagtggagtggaacttcccttggaaactccgttacgcttttcagatcatcgttcttggaac |
341 |
Q |
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| T |
27947252 |
ttgtcattaaaattgattttgatacattgtttcgtagcagaatggcgtggaacttcccttcgaaactctgttacacttttcagatcgtcgttcttagaat |
27947153 |
T |
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| Q |
342 |
ctttacaaaaagccagcaaggtatgaaacattttaaaattgtttctatagtaaattatgatcaaacagattttattttattttatatgagaatgctaaaa |
441 |
Q |
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| T |
27947152 |
ctttgcaaaaagcctgcaaggtatgaaacatttttaaattgtttctgtagtaaattttgatcgaacag-----aaataattttatgtgagaatgctaaaa |
27947058 |
T |
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| Q |
442 |
accgcgattcctttgcttttcatttaa |
468 |
Q |
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| | |||||||||| || |||||||| |
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| T |
27947057 |
attgtgattcctttgtttctcatttaa |
27947031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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