View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_high_1 (Length: 581)
Name: NF7322_high_1
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 164 - 353
Target Start/End: Complemental strand, 35332928 - 35332738
Alignment:
| Q |
164 |
ttaaagatctagagatatttgggatcttaaagtcaatgaaaacttcatccaagtaggtttggattaagtt-gccaaaggtgaactaattggcaataattt |
262 |
Q |
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| T |
35332928 |
ttaaagatctggagatatttgggatcttaaagtcaatgaaaacttcatccaagtaggtctggattaagtttgccaaaggtgaactaattggcaataattt |
35332829 |
T |
|
| Q |
263 |
taccaagaaagtgtggaaatatatgttgcataggtacatgtatattggtatccggtatgacgcggataccaataccagaatacggcaattt |
353 |
Q |
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| T |
35332828 |
taccaagaaagtgtggaaatatatgttgcataggtacatgtatattggtatccggtatgacgcggataccaataccagaatacgacaattt |
35332738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 460 - 570
Target Start/End: Complemental strand, 35328574 - 35328464
Alignment:
| Q |
460 |
tagattgtacacttgaagaaggaaaaaactacattgaaaaatacatggaacactctttttgaaacaacttgtttacaaatatgacaattattataagaca |
559 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35328574 |
tagattgtacacttgaagaaggaaaaaattacaatgaaaaatacacggaacactctttttgaaacaacttgtttacaaatatgacaattattataggaca |
35328475 |
T |
|
| Q |
560 |
tatgaagtatt |
570 |
Q |
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| T |
35328474 |
tatgaagtatt |
35328464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 35333004 - 35332938
Alignment:
| Q |
18 |
aaaagttgcataagatttactaccaacagttcacctttcaaattaatatcatcttaaacaaaatacc |
84 |
Q |
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| T |
35333004 |
aaaagttgcataagatttactaccaacagttcacctttcaaattaatatcatcttaaacaaaatacc |
35332938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 35328810 - 35328770
Alignment:
| Q |
403 |
tataatataaaatgactacaagagagagctaaattctttaa |
443 |
Q |
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|
| T |
35328810 |
tataatataatatgactacatgagagagctaaattctttaa |
35328770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 403
Target Start/End: Complemental strand, 35332694 - 35332659
Alignment:
| Q |
368 |
atacaaatacgtcaataaaatcatgatttttgttat |
403 |
Q |
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| T |
35332694 |
atacaaatacgtcaataaaatcatgagttttgttat |
35332659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 35812108 - 35812150
Alignment:
| Q |
375 |
tacgtcaataaaatcatgatttttgttatataatataaaatga |
417 |
Q |
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| T |
35812108 |
tacgtcaataaaatcatgagttttgttatataatataacatga |
35812150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 3587213 - 3587168
Alignment:
| Q |
372 |
aaatacgtcaataaaatcatgatttttgttatataatataaaatga |
417 |
Q |
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| T |
3587213 |
aaatacgtcaatgaaatcatgaattttgttatataatataacatga |
3587168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 28145082 - 28145040
Alignment:
| Q |
375 |
tacgtcaataaaatcatgatttttgttatataatataaaatga |
417 |
Q |
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| T |
28145082 |
tacgtcaataaaatcatgagttttgctatataatataacatga |
28145040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 28195434 - 28195394
Alignment:
| Q |
377 |
cgtcaataaaatcatgatttttgttatataatataaaatga |
417 |
Q |
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|||||| |||||||||| |||||||||||||||||| |||| |
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| T |
28195434 |
cgtcaagaaaatcatgagttttgttatataatataacatga |
28195394 |
T |
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