View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_high_2 (Length: 488)
Name: NF7322_high_2
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 49 - 471
Target Start/End: Complemental strand, 34567148 - 34566726
Alignment:
| Q |
49 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaagaagaaaataaatttca |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34567148 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaagaagaaaacaaatttca |
34567049 |
T |
|
| Q |
149 |
agttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaagaggtcatag |
248 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567048 |
agttatttcataccccaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaagaggtcatag |
34566949 |
T |
|
| Q |
249 |
agaaactcaaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaaataatagaaaa |
348 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566948 |
agaaactcaaggatgatcaagtcaatatgattagcatctgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaaataatagaaaa |
34566849 |
T |
|
| Q |
349 |
aagtaagctatttgaagaagttgcaatggcaatgtctcccaagatataaaattatgagaaggtccaaattcaaattgcagaggttttgggcatggaattg |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566848 |
aagtaagctatttgaagaagttgcaatggcaatgtctcccaagatataaaattatgagaaggtccaaattcaaattgcagaggttttgggcatggaattg |
34566749 |
T |
|
| Q |
449 |
aaaaaggtcagcgagcaaggaag |
471 |
Q |
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| T |
34566748 |
aaaaaggtcagcgagaaaggaag |
34566726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 34292633 - 34292330
Alignment:
| Q |
16 |
atagagttaaaaatagcaaaaaatgctttggtcgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292633 |
atagagttaaaaatagcaaaaaatgctttggttgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatat |
34292534 |
T |
|
| Q |
116 |
tacaagcatgaaggaagaagaaaataaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagctta |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292533 |
tacaagcatgaaggaagaagaaaacaaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagctta |
34292434 |
T |
|
| Q |
216 |
ttgtctagggagaagattataaagaggtcatagagaaactcaaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292433 |
ttgtctagggagaagattataaagaggtcatagagaaactcaaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccac |
34292334 |
T |
|
| Q |
316 |
aatg |
319 |
Q |
| |
|
|||| |
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|
| T |
34292333 |
aatg |
34292330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 382 - 471
Target Start/End: Complemental strand, 34292313 - 34292225
Alignment:
| Q |
382 |
gtctcccaagatataaaattatgagaaggtccaaattcaaattgcagaggttttgggcatggaattgaaaaaggtcagcgagcaaggaag |
471 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34292313 |
gtctcccaatatataaa-ttatgagaaggtccaaattcaaattgcagaggttttgggcatggaattgaaaaaggtcagcgagaaaggaag |
34292225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 337
Target Start/End: Complemental strand, 34555472 - 34555192
Alignment:
| Q |
58 |
caaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaagaagaaaataaatttcaagttatttc |
157 |
Q |
| |
|
||||||| ||| |||||| |||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||| ||| ||||| |||| || | || || |
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| T |
34555472 |
caaatttgacatataattactcattgggaaagcaagcctctaaaagcattgaatatattataaggttgaaggaggaaaaaaatgaattccagctcatatc |
34555373 |
T |
|
| Q |
158 |
ataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattataaagag-gtcatagagaaactc |
256 |
Q |
| |
|
|||| |||| ||||| ||| |||||||| |||| || || |||| |||||||| ||||||| ||| || ||||| | |||||||||||||| |
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| T |
34555372 |
ctaccataaagctccaccaactcttggatccaccttcactgaagatattaagagcttggagtctaggaagataatcataaaaggagtcatagagaaactg |
34555273 |
T |
|
| Q |
257 |
aaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaa |
337 |
Q |
| |
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||||||||| | |||| | || ||||| ||||| ||||| ||||||||||||||||| |||| |||||| |||||||| |
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| T |
34555272 |
aaggatgataagttcaaaagaataagcatatgtggaatgggtggagtgggaaaaaccactctggtaaaagaaatcatcaaa |
34555192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 34371246 - 34371341
Alignment:
| Q |
243 |
tcatagagaaactcaaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaaa |
338 |
Q |
| |
|
|||||||||| | ||||||| |||| |||| | |||| |||||||||||||||| |||||||| ||||||||| | ||||||||| ||||||||| |
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| T |
34371246 |
tcatagagaagttgaaggatggtcaactcaaaaggattggcatttgtgggatgggtggagtggggaaaaccacacttgtgaaagaactcatcaaaa |
34371341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 460
Target Start/End: Complemental strand, 15896837 - 15896412
Alignment:
| Q |
36 |
aaatgctttggtcgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaagaag |
135 |
Q |
| |
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||||| |||||| ||||||| ||| || ||||||||||||| |||||||||||| |||| |||||||| | ||| ||||||||||| ||||||| ||| |
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| T |
15896837 |
aaatgttttggtggacaatgttcagatatagcatttaattactcattgggaaagcaagcaactaaaaggatagaatatattacaagcctgaaggaggaaa |
15896738 |
T |
|
| Q |
136 |
aaaataaatttcaagttatttcataccctaaacctccattaacacttggatctacctatacaaaaaatatcaagagcttattgtctagggagaagattat |
235 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||| || ||||||||||||||||||||| |||||| || |||||||| |||||||||| || || ||||| |
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|
| T |
15896737 |
aaaacaaatttaaagatatatcttaccctaaagcttcattaacacttggatctaccttcacaaaagatgtcaagagcctattgtctagagaaaaaattat |
15896638 |
T |
|
| Q |
236 |
aa-agaggtcatagagaaactcaaggatgatcaagtcaatatgattagcatttgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatc |
334 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
15896637 |
aacagaggtcatagagaagctcaaggatgatcaagtcaaaatgattagcatttgtgggatgggcggagtaggaaaaaccacactggtgaaagaagtcatc |
15896538 |
T |
|
| Q |
335 |
aaaataatagaaaaaagtaagctatttgaagaagttgcaatggcaat-gtctcccaagatataaaattatgagaaggtccaaattcaaattgcagaggtt |
433 |
Q |
| |
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|||| ||||||||||| || |||||||| ||||||| |||||| | || || |||||| | ||||||||||||| |||||||||||||||| || | |
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| T |
15896537 |
aaaacaatagaaaaaaacaatctatttgatgaagttgtgatggcagtggtttctcaagatgt-aaattatgagaagatccaaattcaaattgctgatact |
15896439 |
T |
|
| Q |
434 |
ttgggcatggaattgaaaaaggtcagc |
460 |
Q |
| |
|
|||||||||||||| ||||||| |||| |
|
|
| T |
15896438 |
ttgggcatggaatttaaaaaggacagc |
15896412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 129548 - 129604
Alignment:
| Q |
281 |
agcatttgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaa |
337 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||| |||| |||||| |||||||| |
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|
| T |
129548 |
agcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaa |
129604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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