View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_high_3 (Length: 396)
Name: NF7322_high_3
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 50141178 - 50140948
Alignment:
| Q |
1 |
ggtgcggaggagggtggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtggcggtggagttggaccgtagtatctgttactag |
100 |
Q |
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| T |
50141178 |
ggtgcggaggagggtggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtggcggtggagttggaccgtagtatctgttactag |
50141079 |
T |
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| Q |
101 |
gtggagggtaataatagtaacttcctccgccactggatgacggaggaggtggaggtggagagtaatagtatgaacctccacttgatccaccaccagagga |
200 |
Q |
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| T |
50141078 |
gtggagg-taattatagtaacttcctccgccactggatgacggaggaggtggaggtggagagtaatagtatgaacctccacttgatccaccaccagagga |
50140980 |
T |
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| Q |
201 |
agtaggtggagaaggagggggagggcagttgt |
232 |
Q |
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| T |
50140979 |
agtaggtggagaaggagggggagggcagttgt |
50140948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 50140913 - 50140801
Alignment:
| Q |
261 |
agatggaacttgtttgcaggggttatcacaagcagcacacattgtgcactggatctgtgctttggaagtggtttttaggtggtgatttgttgcatctgtt |
360 |
Q |
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| T |
50140913 |
agatggaactttgttgcaggggttatcacaagcagcacacattgtgcactggatctgtgctttggaagtggtttttaggtggtgatttgttgcatctgtt |
50140814 |
T |
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| Q |
361 |
gttgctatatgta |
373 |
Q |
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| T |
50140813 |
gttgctatatgta |
50140801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 13407590 - 13407642
Alignment:
| Q |
16 |
ggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtgg |
68 |
Q |
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| T |
13407590 |
ggtggtggagtgtggtaatagaaaggaaaataaggtacaataggatttggtgg |
13407642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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