View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_high_4 (Length: 392)
Name: NF7322_high_4
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 41343477 - 41343844
Alignment:
| Q |
18 |
ttatgtgctgtttgaaaacccatactctcacgtagctttgttagcttcttctttataatctacagaagaaagnnnnnnnntatcacgtgagaattgtaaa |
117 |
Q |
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| T |
41343477 |
ttatgtgctgtttgaaaacccatactctcacgtagctttgttagcttcttctttataatctaaagaagaaagaaaaaaa-tatcacgtgagaattgtaaa |
41343575 |
T |
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| Q |
118 |
aataatacctatacaaatgtatgtatggaaaacatacact---tcttgattttaccttgaaagtgacaagtagaaaaatcatatgtttcatgtttaattg |
214 |
Q |
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| T |
41343576 |
aataatacctatacaaatgtatgtatggaaaacatacactacttcttgattttaccttgaaagtgacaagtagaaaaatcatatgtttcatgtttaattg |
41343675 |
T |
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| Q |
215 |
gatctcggatagtgattccactcacctttgtgcagtaatttcctgaaaacaaaaccgtgaaggtttggatcatcagaactaattatacaaatttgatcaa |
314 |
Q |
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| T |
41343676 |
gatctcggatagtgattccactcacctttgtgcagtaatttcctgaaaacaaaaccgtgaaggtttggatcatcagaactaattatacaaatttgatcaa |
41343775 |
T |
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| Q |
315 |
ttgtatattagtcatggaagaactcaatactacaaagttatacatttttagtattacctccagtattat |
383 |
Q |
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| T |
41343776 |
ttgtatattattcatggaagaactcaatactacaaagttatacatttttagtattacctccagtcttat |
41343844 |
T |
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