View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7322_high_5 (Length: 350)
Name: NF7322_high_5
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_high_5 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 50250214 - 50249876
Alignment:
| Q |
18 |
ctttcactccctgacaatgatcaagtttaagaacttaaagaatgaggttttgattttgaaatattatccttcaccgttttcttgatattatgaactcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50250214 |
ctttcactccctgacaatgatcaagtttaagaacttgaagaatgaggttttgattttgaaatattatccttcaccgttttcttgatattatgaactcttg |
50250115 |
T |
|
| Q |
118 |
ggtagcatttgtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaacaaaactggaagtcttgatactattcaatgaataaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50250114 |
ggtagcatttgtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaacaaaactggaagtcttgatactattcaatgaataaa |
50250015 |
T |
|
| Q |
218 |
gctaacaaaaaca------acacacacactactagataagaattagcagaattacagatatcgacagttttgtttgtgcgattcactgttatttatgcat |
311 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50250014 |
gctaaccaaaacaatacacacacacacactactagataagaattagcagaattacagatatcgacagttttgtttgtgcgattcactgttatttatgcat |
50249915 |
T |
|
| Q |
312 |
gtgtaactggatagagttataaatatatgttgttgtcac |
350 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50249914 |
ttgtaactggatagagttctaaatatatgttgttgtcac |
50249876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 48170284 - 48170236
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagt |
328 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48170284 |
tttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagt |
48170236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 48147034 - 48146965
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcac |
350 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||| ||||| | ||| |||||||| ||||| |
|
|
| T |
48147034 |
tttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttct-aatgtatgttgtggtcac |
48146965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 37826203 - 37826115
Alignment:
| Q |
262 |
attacagatatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcac |
350 |
Q |
| |
|
|||||| |||| |||||||||| || || | |||| |||||||||||||| ||||| ||||| ||||| ||| | |||||| ||||||| |
|
|
| T |
37826203 |
attacaaatattgacagttttgattatgtgtttcattgttatttatgcatatgtaattggattgagttctaattgtatgtttttgtcac |
37826115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 7790915 - 7790958
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgtgtaactggat |
323 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
7790915 |
tttgtttgtgtgactcactgttatttatgcatctgtaactggat |
7790958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 48864853 - 48864896
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgtgtaactggat |
323 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
48864853 |
tttgtttgtgtgaatcattgttatttatgcatgtgtaactggat |
48864896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 50667041 - 50667081
Alignment:
| Q |
122 |
gcatttgtatgctaatatgtgtttgactgcatttgtaacat |
162 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
50667041 |
gcatttgtaggataatatgtgtttgactgcatttataacat |
50667081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 24367923 - 24367973
Alignment:
| Q |
269 |
atatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaact |
319 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
24367923 |
atattgacagctttgtttgggcgattcactattatttatgcatgtgtaact |
24367973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 24323777 - 24323817
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgtgtaactg |
320 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
24323777 |
tttgtttgtgcgattcgcggttatttatgcatatgtaactg |
24323817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 12201168 - 12201201
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgt |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
12201168 |
tttgtttgtgtgattcactgttatttatgcatgt |
12201201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 12445596 - 12445629
Alignment:
| Q |
280 |
tttgtttgtgcgattcactgttatttatgcatgt |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
12445596 |
tttgtttgtgtgattcactgttatttatgcatgt |
12445629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University