View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_10 (Length: 336)
Name: NF7322_low_10
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 45792370 - 45792676
Alignment:
| Q |
21 |
atcaaaatgattaatcagaagtttggcttggtggctctgtgacctagcagcaccatgagctccttgagtagcctagtggcgagagtcccacacattaagg |
120 |
Q |
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| T |
45792370 |
atcaaaatgattaatcagaagtttggcttggtggctctgtgacctagcagcaccatgagctccttgagtagcctagtggcgagagtcccacacattaagt |
45792469 |
T |
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| Q |
121 |
gtgaagaagtggagaattgcggatttgaacccgcgccccaacacatcaaactgtttttgggtttgaccatacaaatataactactaaaaataatgttcat |
220 |
Q |
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| T |
45792470 |
gtgaagaagtggagaattgcggatttgaacccgcgccccaacacatcaaactgtttttgggtttgaccatacaaatataactactaaaaataatgttcat |
45792569 |
T |
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| Q |
221 |
acataatgtggcctgtgtagcgccggaacaaaactgaaagatcccactaatcaaggcctgaaactttcatcacttatccctgtgctaattgttttgtttg |
320 |
Q |
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| T |
45792570 |
acataatgtggcctgtgtagcgccggaacaaaactgaaagatcccactaatcaaggcctgaaactttcatcacttatccctgtgctaattgttttgtttg |
45792669 |
T |
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| Q |
321 |
tctctgc |
327 |
Q |
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| T |
45792670 |
tctctgc |
45792676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 43818433 - 43818370
Alignment:
| Q |
28 |
tgattaatcagaagtttggcttggtggctctgtgacctagcagcaccatgagctccttgagtag |
91 |
Q |
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| T |
43818433 |
tgattagtcaaaagtttggcttggtggctctgtgatctaacaacactatgagctccttgagtag |
43818370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 35997087 - 35997029
Alignment:
| Q |
94 |
tagtggcgagagtcccacacattaagggtgaagaagtggagaattgcggatttgaaccc |
152 |
Q |
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| T |
35997087 |
tagtggctagagtcacacacattatgtgtgaagaagtggagaattcggaatttgaaccc |
35997029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 7339611 - 7339559
Alignment:
| Q |
87 |
agtagcctagtggcgagagtcccacacattaagggtgaagaagtggagaattg |
139 |
Q |
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| T |
7339611 |
agtagcctagtggctagattcacacacattatgtgtgaagaagtgaagaattg |
7339559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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