View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_11 (Length: 313)
Name: NF7322_low_11
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 55100611 - 55100851
Alignment:
| Q |
16 |
attcaaagtattgtggtaaataaaaaacaattcttagtagtgtttgccaagtgaaaagcagnnnnnnnnnnntaattacaagtccaacaatcaaaatttc |
115 |
Q |
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| T |
55100611 |
attcaaagtattgtggtaaataaaaaacaattcttagtagtgttagccaagtgaaaagcagaaaaaaataa-taattacaagtccaacagtcaaaatttc |
55100709 |
T |
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| Q |
116 |
tcgagggttgttgatatttgtgagtactgctctataggcctccacattgctgggaaaaactcccatttatcggaatgtatcttccgttaagcnnnnnnnc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |
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| T |
55100710 |
tcgagggttgttgatatttgtgagtactgctctataggcctccacattgctgggaaaagctcccatttatcggaatgtatcttccgtttagctttttttc |
55100809 |
T |
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| Q |
216 |
ccactcaaatctaaatctattggattctactttcgaatgcac |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
55100810 |
ccactcaaatctaaatctattggattctactttcgaatgcac |
55100851 |
T |
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