View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_12 (Length: 304)
Name: NF7322_low_12
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_12 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 9799 - 10070
Alignment:
| Q |
21 |
agggttcgaatccctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799 |
agggttcgaatccctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgga |
9898 |
T |
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| Q |
121 |
ttctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctata |
220 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
9899 |
ttctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctata |
9997 |
T |
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| Q |
221 |
catgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
293 |
Q |
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| T |
9998 |
catgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
10070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 18180794 - 18181065
Alignment:
| Q |
21 |
agggttcgaatccctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgga |
120 |
Q |
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| T |
18180794 |
agggttcgaatccctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgga |
18180893 |
T |
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| Q |
121 |
ttctctattcctaatttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctata |
220 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
18180894 |
ttctctattcctaatttatttctgttttctgtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctata |
18180992 |
T |
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| Q |
221 |
catgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180993 |
catgaatggggggaaatcctcggatcaaaattattcttattttaattaggtttaagtctgacgagaataatat |
18181065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 37189462 - 37189616
Alignment:
| Q |
34 |
ctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattccta |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37189462 |
ctctctttccgcacccttatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattccta |
37189561 |
T |
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| Q |
134 |
atttatttctgttttctgtaatnnnnnnnntagtggaataaagtgggcaaggaat |
188 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37189562 |
atttatttctgttttctgtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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