View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7322_low_15 (Length: 262)

Name: NF7322_low_15
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7322_low_15
NF7322_low_15
[»] chr4 (13 HSPs)
chr4 (4-255)||(50249645-50249895)
chr4 (10-119)||(37826021-37826128)
chr4 (88-157)||(48734359-48734428)
chr4 (89-157)||(48865055-48865121)
chr4 (51-109)||(7801490-7801548)
chr4 (88-157)||(48853665-48853735)
chr4 (4-118)||(50669901-50670013)
chr4 (88-162)||(45370972-45371046)
chr4 (18-89)||(7772880-7772946)
chr4 (51-105)||(7814330-7814384)
chr4 (51-105)||(7823822-7823876)
chr4 (123-157)||(50681946-50681980)
chr4 (116-157)||(7879391-7879432)
[»] chr7 (1 HSPs)
chr7 (87-157)||(48884917-48884987)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 50249895 - 50249645
Alignment:
Q  4 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctcta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249895 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctcta 50249796  T
Q  104 atttcagcggactctatt-aactttggcccttgccatttatctgtttcaaaccagaaaagnnnnnnnnctaatttcaaaattattcagttctgctctcta 202  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||    
T  50249795 atttcagtggactctattaaactttggcccttgccatttatctgtttcaaaccaggaaa--aaaaaaactaatttcaaaattattcagttctgctctcta 50249698  T
Q  203 tgttctttactctctttatattcagtctagataggatttcttttcagtattat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50249697 tgttctttactctctttatattcagtctagataggatttcttttcagaattat 50249645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 37826128 - 37826021
Alignment:
Q  10 tatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaa---aaggttttgttctctaatt 106  Q
    |||||| ||||||||||||||||| ||||||||||      ||||||||| ||||||| |||||||||||||||||||   |||||||||||||||||||    
T  37826128 tatgtttttgtcactgtctgaaatggttttatatg-----gtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatt 37826034  T
Q  107 tcagcggactcta 119  Q
    |||| ||||||||    
T  37826033 tcagtggactcta 37826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 48734428 - 48734359
Alignment:
Q  88 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 157  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  48734428 aaggttttcttctctaattttagcggactctattaactttagcccttgccatttctctgtttcaaaccag 48734359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 48865055 - 48865121
Alignment:
Q  89 aggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 157  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||||  |||||||||||||||    
T  48865055 aggttttgttctctaatttcagcggactccattatctatggccattgccatt--tctgtttcaaaccag 48865121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 7801490 - 7801548
Alignment:
Q  51 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttca 109  Q
    |||| |||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  7801490 taaaataatctaattagtttatgcatgttgaaggagaaaggttttgttctctaatttca 7801548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 48853665 - 48853735
Alignment:
Q  88 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctg-tttcaaaccag 157  Q
    |||||||||||||||||||| || |||  ||||||| ||||||||||||||||| |||| |||||||||||    
T  48853665 aaggttttgttctctaattttagtggaaactattaagtttggcccttgccatttctctgttttcaaaccag 48853735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 50669901 - 50670013
Alignment:
Q  4 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaag---gttttgttct 100  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| |||| |||     |||| | | ||||||||| |||||||||||||   ||||||||||    
T  50669901 taaatgtatgttgttgtgactgcttgaaattgttttatatggtaaactaa-----tctggttaatttatgcatgttgaaggaaaaagaaggttttgttct 50669995  T
Q  101 ctaatttcagcggactct 118  Q
    ||||||| || |||||||    
T  50669996 ctaattttagtggactct 50670013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 45371046 - 45370972
Alignment:
Q  88 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccagaaaag 162  Q
    ||||||||||||||||| || || ||||||||||||||||  |||||||||| | ||  ||||||||||| ||||    
T  45371046 aaggttttgttctctaaatttagtggactctattaactttatcccttgccatctctcaatttcaaaccaggaaag 45370972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7772946 - 7772880
Alignment:
Q  18 tgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaa 89  Q
    ||||||||  |||||||||||||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatg-----gtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 7814330 - 7814384
Alignment:
Q  51 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 105  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7814330 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7814384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 7823822 - 7823876
Alignment:
Q  51 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 105  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7823822 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7823876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 50681946 - 50681980
Alignment:
Q  123 actttggcccttgccatttatctgtttcaaaccag 157  Q
    ||||||||||||||||||| |||||||||||||||    
T  50681946 actttggcccttgccatttctctgtttcaaaccag 50681980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 7879391 - 7879432
Alignment:
Q  116 tctattaactttggcccttgccatttatctgtttcaaaccag 157  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7879391 tctactaactttggcccttgtcatttctctgtttcaaaccag 7879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 48884917 - 48884987
Alignment:
Q  87 aaaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 157  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||| |||||   |||||||||||||    
T  48884917 aaaggctttgttctctaatttcaatggactctattaactctggcccttgtcatttcattgtttcaaaccag 48884987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University