View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_16 (Length: 254)
Name: NF7322_low_16
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11164479 - 11164718
Alignment:
| Q |
1 |
agcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11164479 |
agcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgctgtagaggccgaccgaagaagtcgctggtgggttcagctt |
11164578 |
T |
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| Q |
101 |
cgggttcgaatagtaatgaattctattattattctgggtttggtccatcacggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaa |
200 |
Q |
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| T |
11164579 |
cgggttcgaatagtaatgaattctattattattctgggtttggtccatcgcggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaa |
11164678 |
T |
|
| Q |
201 |
gagtgttgtggaattaggttctactagtagtgataatgtt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11164679 |
gagtgttgtggaattaggttctactagtagtgataatgtt |
11164718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11157540 - 11157654
Alignment:
| Q |
1 |
agcagcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagctt |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |||||||||| || || || |||||||||||||||||||||| ||||||||| |||| |
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| T |
11157540 |
agcaacaaaggtttgaagagaaactggaatgggggcggcggcattgaggctccgcggcgtggtagaggccgaccgaagaagtc---ggtgggttcggctt |
11157636 |
T |
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| Q |
101 |
cgggttcgaatagtaatg |
118 |
Q |
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| T |
11157637 |
cgggttcaaataataatg |
11157654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 4703693 - 4703486
Alignment:
| Q |
6 |
caaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagcttcgggt |
105 |
Q |
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||||||||||||||||||||| |||||||| || |||||||||||| || || |||||||| ||||||||||| | || ||||||||| ||| |
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| T |
4703693 |
caaaggtttgaagagaaactcaaatgggggaggagacattgaggcgccgcggcgtggtagaggcagaccgaagaaggtgaaagcggattcagcttcaggt |
4703594 |
T |
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| Q |
106 |
tcgaatagtaatgaattctattattattctgggtttggtccatcacggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaagagtg |
205 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||| ||||| ||||| ||| ||||||||||||||||||| |
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| T |
4703593 |
tcgaataataatgaattctatttttattctgggtttggtccaccacgaggga---aacgaagaggtga---taaaaatgatggtgaagataacaagagtg |
4703500 |
T |
|
| Q |
206 |
ttgtggaattaggt |
219 |
Q |
| |
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|||| | ||||||| |
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| T |
4703499 |
ttgtagcattaggt |
4703486 |
T |
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