View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7322_low_17 (Length: 254)

Name: NF7322_low_17
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7322_low_17
NF7322_low_17
[»] chr6 (13 HSPs)
chr6 (1-249)||(33303712-33303960)
chr6 (1-158)||(33261922-33262081)
chr6 (1-203)||(33409248-33409448)
chr6 (3-162)||(33358226-33358393)
chr6 (1-179)||(33387462-33387636)
chr6 (25-203)||(33398336-33398512)
chr6 (1-89)||(33407756-33407844)
chr6 (62-145)||(31563400-31563483)
chr6 (1-135)||(9166095-9166225)
chr6 (1-101)||(28870707-28870806)
chr6 (1-89)||(33396806-33396894)
chr6 (1-101)||(33281096-33281196)
chr6 (64-108)||(33056935-33056979)
[»] scaffold0428 (2 HSPs)
scaffold0428 (16-162)||(5691-5839)
scaffold0428 (1-101)||(13056-13156)
[»] chr2 (2 HSPs)
chr2 (1-106)||(17441433-17441538)
chr2 (1-89)||(17446960-17447048)
[»] scaffold1408 (1 HSPs)
scaffold1408 (16-107)||(2-93)
[»] chr4 (1 HSPs)
chr4 (16-102)||(31499608-31499694)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33303960 - 33303712
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33303960 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttcttggctgggaagtgcaagaatttggcaattgaagatgagacacaac 33303861  T
Q  101 cagaaccggaacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatagatcacaagaaggtgatgaagagtctcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33303860 cagaaccggaacaagaacaagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatggatcacaagaaggtgatgaagagtctcaa 33303761  T
Q  201 cctgcaaaatacaatctgcaatgaagagcattgacatgatgtccatctc 249  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  33303760 cctgcaaaatacaatctgcaatgaagagcattgacattatgttcatctc 33303712  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 33262081 - 33261922
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| ||||||||||||||||||||||||||    
T  33262081 tgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaac 33261982  T
Q  101 cagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaa 158  Q
    || ||||  ||  ||||||||||||||||| ||||  ||||||||  |||||||||||||    
T  33261981 cacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa 33261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33409448 - 33409248
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||| | |||||||| |||||||||||||| ||||||| ||| |||  |||||| |||| | ||||||||||||  ||||||||||    
T  33409448 tgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtgtaagattatggcaattgaaggcgagacacaac 33409349  T
Q  101 cagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttc--acagagaagaaacaacagatagatcacaagaaggtgatgaagagtc 196  Q
    || ||||      ||||||||||||||||||||||  ||||||||  |||||  | | |||||||||||||||| |||||||||||||| | |||||||     
T  33409348 cacaacc------agaacaagaatcattcatctcacaagtcataactacttcgaagaaagaagaaacaacagatggatcacaagaaggtcaagaagagtt 33409255  T
Q  197 tcaacct 203  Q
    |||||||    
T  33409254 tcaacct 33409248  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 33358393 - 33358226
Alignment:
Q  3 taaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgaga------ca 96  Q
    |||| ||||||| ||||| |||||||| |||||||||||||| |||||| ||||  ||||||| ||||||| |||||||||||||||| |||      |     
T  33358393 taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaatctcttaactgggaaatgcaagattttggcaattgaagattagacgcaaccg 33358294  T
Q  97 caaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 162  Q
    |||||  ||||| ||| ||||||||||||||||||||||  ||||||||  |||||||||||||||||    
T  33358293 caaccgcaaccgcaactagaacaagaatcattcatctcacaagtcataattacttcacagagaagaaa 33358226  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 33387636 - 33387462
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||||||||||||| ||||||| ||||| ||||||| ||| |||  |||||| |||| ||||||||||||||||| ||||||||    
T  33387636 tgtaaacaagacctacaagaattcaacttaccaatgataaatcacgaaaattccttggctccgaagtgtaagattttggcaattgaagatgggacacaac 33387537  T
Q  101 cagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaacaacagatagatcacaa 179  Q
     | ||||      | |||||||||||||||| |||  ||||||||  | | ||| ||||||||||||||||| ||||||||    
T  33387536 tacaacc------acaacaagaatcattcatgtcacaagtcataactagtacaccgagaagaaacaacagatggatcacaa 33387462  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 33398512 - 33398336
Alignment:
Q  25 aacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaat 124  Q
    ||||| |||||||||||||| ||||||| |||||||   ||||| |||| | ||||||||||||  |||||||||||| ||||      |||||||||||    
T  33398512 aacttcacaatgatgaatcatgaaaattcctttgctcaaaagtgtaagattatggcaattgaaggcgagacacaaccacaacc------agaacaagaat 33398419  T
Q  125 cattcatctcaagagtcataa--acttcacaga--gaagaaacaacagatagatcacaagaaggtgatgaagagtctcaacct 203  Q
    |||||||||||  ||||||||  |||||  |||  ||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  33398418 cattcatctcacaagtcataactacttcgaagaaggaagaaacaacagatggatcacaagaaggtcacgaagagtttcaacct 33398336  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33407844 - 33407756
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 89  Q
    |||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| ||| |||  ||||||||||| ||||| |||||||||    
T  33407844 tgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaattccttggctcagaagtgcaagattttggaaattgaaga 33407756  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 31563400 - 31563483
Alignment:
Q  62 ggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa 145  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| | ||  ||||||| |||| |||||||||  ||||||||    
T  31563400 ggaagtgaaagaatttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataa 31563483  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 9166225 - 9166095
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| |||||||||||   ||||||||| ||||| |  || ||| ||| |||||||| |||||||||| | ||||||| ||| |    
T  9166225 tgtaaacaagacctacaagagttcaacttaac---gatgaatcacgaaaaatcattggctcggacgtgcaagactttggcaatttaggatgagagacagc 9166129  T
Q  101 cagaaccggaacaagaacaagaatcattcatctca 135  Q
    || |||| |||| |||||||||||||||| |||||    
T  9166128 cacaacc-gaaccagaacaagaatcattcgtctca 9166095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28870707 - 28870806
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| |||||||||||||||||||| ||  |||||| ||| |||  ||||| ||||| ||||| ||||||||||| ||||||||    
T  28870707 tgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaattccttggctcagaagttcaagattttggaaattgaagatgggacacaac 28870805  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33396894 - 33396806
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 89  Q
    |||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| ||| | |  ||||||||||| ||||| |||||||||    
T  33396894 tgtaaacaagacctacaaaagttcaacttaacaatgatgaatcatgaaaattccttggttcagaagtgcaagattttggaaattgaaga 33396806  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33281196 - 33281096
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  ||||||||||| ||||| ||||||||||| ||||||||    
T  33281196 tgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaagattttggaaattgaagatgggacacaac 33281097  T
Q  101 c 101  Q
    |    
T  33281096 c 33281096  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 33056979 - 33056935
Alignment:
Q  64 aagtgcaagaatttggcaattgaagatgagacacaaccagaaccg 108  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  33056979 aagtgcaaaattttgacaattgaagatgagacacaaccagaaccg 33056935  T

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Target: scaffold0428 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 5839 - 5691
Alignment:
Q  16 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaag 115  Q
    ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| |||||||||||||||||||||||||||| ||||  ||  ||    
T  5839 caagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaaccacaaccacaatcag 5740  T
Q  116 aacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 162  Q
    ||||||||||||||| ||||  ||||||||  |||||||||||||||||    
T  5739 aacaagaatcattcacctcacaagtcataactacttcacagagaagaaa 5691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13056 - 13156
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  ||||||||||| ||||| ||||||||||| ||||||||    
T  13056 tgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgcaagattttggaaattgaagatgggacacaac 13155  T
Q  101 c 101  Q
    |    
T  13156 c 13156  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 17441433 - 17441538
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaac 100  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||| |||||   ||| |||  ||||||||||| ||||||||||||||||||||||||||    
T  17441433 tgtaaacaagacctacaagagttcaacttaacaatgatgaatcacgaaaaaaccttggctcagaagtgcaagattttggcaattgaagatgagacacaac 17441532  T
Q  101 cagaac 106  Q
    ||||||    
T  17441533 cagaac 17441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17446960 - 17447048
Alignment:
Q  1 tgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 89  Q
    |||||| ||||||| ||||| ||||||||||||||| ||||| | ||||||| ||| |||  ||||||||||| ||| | |||||||||    
T  17446960 tgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga 17447048  T

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Target: scaffold1408 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 93 - 2
Alignment:
Q  16 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaacc 107  Q
    ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| || |||| |||||||||||||||||||||||||||| ||||    
T  93 caagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatgtaagattttggcaattgaagatgagacacaaccacaacc 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 31499608 - 31499694
Alignment:
Q  16 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacca 102  Q
    ||||| || ||||||||||||||||||||   ||||  ||| ||||| ||| |||||  ||||||||||||||||||| ||||||||    
T  31499608 caagagttgaacttaacaatgatgaatcacagaaataccttagctggaaagcgcaagtctttggcaattgaagatgaggcacaacca 31499694  T

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