View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_3 (Length: 541)
Name: NF7322_low_3
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 525
Target Start/End: Complemental strand, 28198808 - 28198296
Alignment:
| Q |
13 |
aatatccctttcaggactttcatcaaacactttacacgcatttttcataaacccagaacacccaaaagcagaaatgaaaccattacaaacaaaacaatca |
112 |
Q |
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| T |
28198808 |
aatatccctttcaggactttcatcaaacactttacacgcatttttcataaacccagaacacccaaaagcagaaatgaaaccattacaaacaaaacaatca |
28198709 |
T |
|
| Q |
113 |
tgattaaaaccaagtttaaaaacttgagcatacaccataaaagggagatgatcattcggcacaccattctttgaaaaaatctttaaaagcaaaggaaacg |
212 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28198708 |
tgatcaaacccaagtttaaaaacttgagcatacaccataaaagggagatgatcattcggcacaccattctttgaaaaaatctttaaaagcaaagggaacg |
28198609 |
T |
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| Q |
213 |
tgtgtttatctggttgaacacccatttcatgcattttggcataagaaagaagtattgttttagggaaagatgttatgagtttgttgaagagacgagtgtt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28198608 |
tgtgtttatctggttgaacacccatttcatgcattttggcataagaaagaagtgttgttttagggaaagatgttatgagtttgttgaagagacgagtgtt |
28198509 |
T |
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| Q |
313 |
gggagtgtggattgtgttgaggagaaggtgaagagatgaagtttgaggttgagagagtggtgcgcattggatgagtttggcaacgaaaatggcgtcttgg |
412 |
Q |
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| T |
28198508 |
gggagtgtggattgtgttgaggagaaggcgaagagatgaagtttgaggttgagagagtggtgcgcattggatgagtttggcgacgaaaatggcgtcttgg |
28198409 |
T |
|
| Q |
413 |
agtgtgtagagaccggaggtgatgatcgtggattgaatttgattccattgtttcaggttttggtgattctttgaaagggatgcaattgcattgcgcagag |
512 |
Q |
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| T |
28198408 |
agtgtgtagagaccggaggtgatgatcgtggattgaatttgattccattgtttcaggttttgatggttctttgaaagggatgcaattgcattgcgcagat |
28198309 |
T |
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| Q |
513 |
aaactaaaacttg |
525 |
Q |
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| T |
28198308 |
aaactaaaacttg |
28198296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 28372270 - 28372140
Alignment:
| Q |
13 |
aatatccctttcaggactttcatcaaacactttacacgcatttttcataaacccagaacacccaaaagcagaaatgaaaccattacaaacaaaacaatca |
112 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
28372270 |
aatatccctttgaggactttcatcaaacattttacacgcacttttcggaaacccagaacacccaaaagccgaaatcaaatcattacaaacaaaacaatca |
28372171 |
T |
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| Q |
113 |
tgattaaaaccaagtttaaaaacttgagcat |
143 |
Q |
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| T |
28372170 |
aaatcaaacccaagtttaaatatttgagcat |
28372140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 44769209 - 44769308
Alignment:
| Q |
13 |
aatatccctttcaggactttcatcaaacactttacacgcatttttcataaacccagaacacccaaaagcagaaatgaaaccattacaaacaaaacaatca |
112 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
44769209 |
aatatccctttgaggactttcatcaaacattttacacgcacttttcggaaacccagaacacccaaaagccgaaatgaaatcattacaaacaaaacaatca |
44769308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 9e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 177 - 504
Target Start/End: Complemental strand, 2377711 - 2377381
Alignment:
| Q |
177 |
cattctttgaaaaaatctttaaaagcaaaggaaacgtgtgtttatctggttgaacacccatttcatgcattttggcataagaaagaagtattgttttagg |
276 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| ||||||||||||||| ||||| |||| ||||| |
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| T |
2377711 |
cattctttgaaaaaatctttaaaagcaaagggaacgtgtgtttat--ggttgaacatcaatttcacagattttggcataagaatgaagtgttgtattagg |
2377614 |
T |
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| Q |
277 |
gaaagatgttatgagtttgttgaagagacgagtgttgggagtgtggattgtgttgaggagaaggtgaagagatgaagtttgaggttgagagagtggtgcg |
376 |
Q |
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| T |
2377613 |
gaaagatgtgatgagtttgttgaagaggcgagtgtctgaagtgtggattgtgttgagtagaaggtgaagagatgaagtttgaggttgagagagtggtggg |
2377514 |
T |
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| Q |
377 |
cattggatgagtttggcaacg-aaaatggcgtcttg----gagtgtgtagagaccggaggtgatgatcgtggattgaatttgattccattgtttcaggtt |
471 |
Q |
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|||||||||||||||| ||| ||||| |||| ||| |||| |||| || ||| ||||| || ||||||||||||||||||||||||| ||||| |
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| T |
2377513 |
cattggatgagtttggtgacgaaaaatagcgtgttgaaatgagtagatagatactggaagtgattatgatggattgaatttgattccattgttttaggtt |
2377414 |
T |
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| Q |
472 |
ttggtgattctttgaaagggatgcaattgcatt |
504 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
2377413 |
ttggtggttctttgaaagggatgcaattgcatt |
2377381 |
T |
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