View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7322_low_5 (Length: 402)
Name: NF7322_low_5
Description: NF7322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7322_low_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 148 - 402
Target Start/End: Original strand, 45167256 - 45167508
Alignment:
| Q |
148 |
agattgcacaacagaccacagacaacaaagggtccggtccatttgacagaacagccaaagctggatggatttcttagatttagatgcgtggggtttttat |
247 |
Q |
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| T |
45167256 |
agattgcacaacagaccacagacaacaaagggtc-----catttgacagaacagccaaagctggatggatttcttagatttagatgcgtgggatttttat |
45167350 |
T |
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| Q |
248 |
tttctcctttctcactaattttgaactattgaccgataatggtactgctactttttctcaattgccatgcctaatgttgtctaggtaagtgtctggttga |
347 |
Q |
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| T |
45167351 |
tttctcctttctcactaattttgaactattgaccgataatggtactactactttttctcaattgccatgcctaatgtcgtctaggtaagtgtctggttga |
45167450 |
T |
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| Q |
348 |
aacttgtttgtcttttttaacttgtcc---gatagagtaatgtctcactctcaacttt |
402 |
Q |
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| T |
45167451 |
aacttgtttgtcttttttaacttgtccgatgatagagtaatgtctcactctcaacttt |
45167508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 45161826 - 45161970
Alignment:
| Q |
9 |
tggagttcacgcgcttcccaatccactggcctgcttgcaagtgtgatgttatgtagtaacgtgtaatgtgttttttcctagaagatgcaatgttatgttg |
108 |
Q |
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| T |
45161826 |
tggagttcacgcgcttcccaatccactggcctgcttgctagtgtgatgttatgtagtaacgtgtaatgtgttttttcctagaagatgcaatgttatgttg |
45161925 |
T |
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| Q |
109 |
taagagtagaagaactgaaaaacacgttgatgtttgtagagattg |
153 |
Q |
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| T |
45161926 |
taagagtagaagaactgaaaaacacgttgatgtttgtagagattg |
45161970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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