View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_high_13 (Length: 282)
Name: NF7323_high_13
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 35784465 - 35784242
Alignment:
| Q |
40 |
gagagattctttatcctttactaacttggtgctagagtcggaaaggcttaactaaacttacaactttacctatnnnnnnnntagctgtaaaatgaatttt |
139 |
Q |
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| T |
35784465 |
gagagattctttatcctttactaacttggtgctagagtcggaaaggcttaactcaacctacatctttacctataaaaaaaa-agctgtaaaacgaatttt |
35784367 |
T |
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| Q |
140 |
tatagatagaataagagaaata--caaatagtatttgatcctccaaaccacaaaaattccaagggatattcgatccaacgaaacacataaactagtctaa |
237 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35784366 |
tatagatagaataagagaaatatacaaatagtatttgatccttcaaaccacaaaaattccaagggatattcgatccaacgaaacacataaactagtctaa |
35784267 |
T |
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| Q |
238 |
aagaaagtaacatttccgagtaaca |
262 |
Q |
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||||||||||||||||||||||||| |
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| T |
35784266 |
aagaaagtaacatttccgagtaaca |
35784242 |
T |
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