View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_high_14 (Length: 269)
Name: NF7323_high_14
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 13290087 - 13289825
Alignment:
| Q |
8 |
gacatcacatattcacccaaaaaatttaaggtattaggtatattcgttttatcacttatatattatcttctatcaaatgtggaactttaacttacacttg |
107 |
Q |
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| T |
13290087 |
gacatcacatattcacccaaaaaacttaaggtattaagtatatcggtcctctcacttatatattcgcttctatccaatgtggaactttaactcacacttg |
13289988 |
T |
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| Q |
108 |
acacatcacaac--------cgtcaagtgtgagactatctccaagagatcgttgagtttaaatgtgagtgattaagtctcgcattgactatcaataagct |
199 |
Q |
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| T |
13289987 |
acacatcacaacaacctcgccgtcaagtgtaagactatctccaagaaatcgttgagtttaaatgtgagtgattaagtctcgcattgactatgaataagct |
13289888 |
T |
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| Q |
200 |
aatgttgtatatataagagaggtagcccannnnnnnattgcctaatgattttgggtggagatg |
262 |
Q |
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| T |
13289887 |
aatgttgtatatataagagaggtagcccatttttttattgcctaatgattttgggtggagatg |
13289825 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 23041571 - 23041526
Alignment:
| Q |
74 |
cttctatcaaatgtggaactttaacttacacttgacacatcacaac |
119 |
Q |
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| T |
23041571 |
cttctatctaatgtggaactttaactcacacttgacatatcacaac |
23041526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 29977399 - 29977429
Alignment:
| Q |
83 |
aatgtggaactttaacttacacttgacacat |
113 |
Q |
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| T |
29977399 |
aatgtggaactttaacttacacttgacacat |
29977429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 45815378 - 45815334
Alignment:
| Q |
75 |
ttctatcaaatgtggaactttaacttacacttgacacatcacaac |
119 |
Q |
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| T |
45815378 |
ttctatcaaatgtgaaactttaactcatacttaacacatcacaac |
45815334 |
T |
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