View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7323_high_18 (Length: 240)
Name: NF7323_high_18
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 28788431 - 28788258
Alignment:
| Q |
1 |
ctcaattattttttagataattttcttttataaccaagaaatgcaattgcgaaaaagaataaactgaagggacataaatctaatccatgaaagaaagtag |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
28788431 |
ctcaattattttttagataattt-cttttataagcaagaaatgcacttgcgaaaaagaataaactgaagggacataaatctaatcgatgaaagaaagaag |
28788333 |
T |
|
| Q |
101 |
ataaggaaaatgtaaataaaaaagcttttcatattattaaataaggatttcattcctacattctcaaatatagtcttt |
178 |
Q |
| |
|
| ||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28788332 |
acaagaaaaatataaataaaaaagcgtttca---tattaaataaggatttcattcctacattctcgaatatagtcttt |
28788258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 15139650 - 15139687
Alignment:
| Q |
145 |
ggatttcattcctacattctcaaatatagtctttctct |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
15139650 |
ggatttcattcctatattctcaaatataatctttctct |
15139687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University