View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_high_3 (Length: 431)
Name: NF7323_high_3
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 22529393 - 22528987
Alignment:
| Q |
13 |
catcagggtgaatcagcagttaactgttgaggaattacaaaaccgacgacaactaactgccgaggaaaaagcagccgacgacagttaaccgtcgaacggt |
112 |
Q |
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||||||| || ||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22529393 |
catcaggttgcatcggcagttaactattgaggaattacaaaatcggcgacaactaactgccgaggaaaaagcagccgacgacagttaaccgtcgaagggt |
22529294 |
T |
|
| Q |
113 |
attttcgatcttttacaaatgtgctttagccttctttagtgtgtgaacaacaattttcctagaggaaagttaaagaaaagtgtgaaattgaattgtgaga |
212 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22529293 |
attt-cggtcttttacaaatgtgctttagccttctttagtgtgtgaacaacaattttcctagaggaaagttaaagaaaagtgtgaaattgaattgtgaga |
22529195 |
T |
|
| Q |
213 |
gtagtttttcagacttgggtctaagtttcagacaaaaatattcatcatgcaaaaatattagaggcacaccctcaccacacactacccactggatctgctc |
312 |
Q |
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|||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22529194 |
gtagtttttcagacttgg-tctgaggtgcagacaaaaatattcatcatgcaaaaatattagaggcacaccctcaccacacactatccactggatctgctc |
22529096 |
T |
|
| Q |
313 |
ctgcatgttgtattcaacctattagagataaaagaccatccaaatgtggtagctcatgctattgcaagcagaccactttattagttagcctcaccattta |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22529095 |
ctgcatgttgtattcaacatattagagataaaagaccaaccaaatgtggtagctcatgctattgcaagcagaccactttattagttagcctcaccatttg |
22528996 |
T |
|
| Q |
413 |
ctttgatgt |
421 |
Q |
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||||||||| |
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| T |
22528995 |
ctttgatgt |
22528987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 35463931 - 35463889
Alignment:
| Q |
123 |
ttttacaaatgtgctttagccttctttagtgtgtgaacaacaa |
165 |
Q |
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| T |
35463931 |
ttttacaaatgtgttttagccttctttaatatgtgaacaacaa |
35463889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 30424036 - 30423922
Alignment:
| Q |
55 |
ccgacgacaactaactgccgaggaaaaagcagccgacgacagttaaccgtcgaacggtattttcgatcttttacaaatgtgctttagccttctttagtgt |
154 |
Q |
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||||||| ||||| ||||||||||| || ||||||||| |||||||| || ||| |||| |||| |||||||||| | || |||||||| |||||||| |
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| T |
30424036 |
ccgacgaaaactatctgccgaggaagaaacagccgacggcagttaactgttgaagggta-tttccatcttttacatgtatgtattagccttgtttagtgt |
30423938 |
T |
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| Q |
155 |
gtgaacaacaattttc |
170 |
Q |
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||| ||| |||||||| |
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| T |
30423937 |
gtgtacatcaattttc |
30423922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 9429086 - 9429147
Alignment:
| Q |
30 |
agttaactgttgaggaattacaaaaccgacgacaactaactgccgaggaaaaagcagccgac |
91 |
Q |
| |
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| T |
9429086 |
agttaactgttgagaaataacaaaactgacagcaactaattgccgaggaaaaagcatccgac |
9429147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 10068444 - 10068392
Alignment:
| Q |
179 |
aagttaaagaaaagtgtgaaattgaattgtgagagtagtttttcagacttggg |
231 |
Q |
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|||||| ||| |||||||||| || ||| |||||||||||||||||||||||| |
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| T |
10068444 |
aagttagagagaagtgtgaaagtggattatgagagtagtttttcagacttggg |
10068392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 47153038 - 47153005
Alignment:
| Q |
137 |
tttagccttctttagtgtgtgaacaacaattttc |
170 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
47153038 |
tttagccttctttagtgtgtcaacaacaattttc |
47153005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29929427 - 29929479
Alignment:
| Q |
29 |
cagttaactgttgaggaattacaaaaccgacgacaactaactgccgaggaaaa |
81 |
Q |
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|||||||||||||||||||| ||||||| | ||| |||||||||||||||| |
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| T |
29929427 |
cagttaactgttgaggaattcaaaaaccggctgcaattaactgccgaggaaaa |
29929479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29978581 - 29978633
Alignment:
| Q |
29 |
cagttaactgttgaggaattacaaaaccgacgacaactaactgccgaggaaaa |
81 |
Q |
| |
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|||||||||||||||||||| ||||||| | ||| |||||||||||||||| |
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| T |
29978581 |
cagttaactgttgaggaattcaaaaaccggctgcaattaactgccgaggaaaa |
29978633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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