View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_high_5 (Length: 385)
Name: NF7323_high_5
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 20551046 - 20550662
Alignment:
| Q |
1 |
acactaacaggttaacaccggacaaaatttaataaaacggaaaaattgaatataaccacacttgtcaatgtcacgttggtatcagacaccatacatgtct |
100 |
Q |
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| T |
20551046 |
acactaacaggttaacaccggtcaaaatttaataaaacggaaaaattgaatataaccacacttgtcaatgtcacgtcggtatcagacaccatacatgtct |
20550947 |
T |
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| Q |
101 |
ttaatgagaagtgttggtgctacatagttcaacactactacttccttattttatttttgtttcatttgctttaacaaatgtattcttgactttcgaattt |
200 |
Q |
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| T |
20550946 |
ttaatgagaagtgttggtgctacatagttcaacactactacttccttattttatttttgtttcatttgctttaacaaatgtattcttgactttcgaattt |
20550847 |
T |
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| Q |
201 |
actgaattatgaaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaagtgcaactacacatactccacaatt |
300 |
Q |
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| T |
20550846 |
actgaattatgaaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaactgcaactacacatactccacaatt |
20550747 |
T |
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| Q |
301 |
tttgggtcttccacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacacc |
385 |
Q |
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| T |
20550746 |
tttgggtctgccacaaggagcatggtctcaaaatggtggatttgaaacagccggagaaggagttgttattgggttggttgacacc |
20550662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 37075702 - 37075553
Alignment:
| Q |
212 |
aaggcagagaggctatcatggagcaatgaagttgccaatgtggttttggatttttctgttagaagtgcaactacacatactccacaatttttgggtcttc |
311 |
Q |
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| T |
37075702 |
aaggcagagaagctatcaaggagaagagaagtgtccaatgtggttttggatttttctgtaagatctgcaacaacacacactccacagttcttaggtctgc |
37075603 |
T |
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| Q |
312 |
cacaaggagcatggtctcaaaatggtggatttgaaacagccggagaagga |
361 |
Q |
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| T |
37075602 |
cacagggagcttggtttcaatcaggtgggtttgaaactgctggagaagga |
37075553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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