View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7323_high_6 (Length: 372)
Name: NF7323_high_6
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_high_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 3705750 - 3706103
Alignment:
| Q |
18 |
cgattttggaaaaactattcactgtgataccaaacatgtgcgcaagtgcaatggggaatgatcgacgatatannnnnnnnnaaagcaataaggaaaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3705750 |
cgattttggaaaaactattcactgtgataccaaacatgtgcgcaagtgcaatggggaatgatcgacgatatatttttttt-aaagcaataaggaaaaaag |
3705848 |
T |
|
| Q |
118 |
ttgtacctgcacatcttgagcattaacatcaagatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3705849 |
ttgtacctgcacatcttgagcattaacatcaagatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttg |
3705948 |
T |
|
| Q |
218 |
gaggggaaaccagaaagtttccaagcaatgtaagtgagcacatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3705949 |
gaggggaaaccagaaagtttccaagcaatgtaagtgagcacatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcg |
3706048 |
T |
|
| Q |
318 |
gtataannnnnnnaaacaaagctacattcctttgtagcaaattcaatctggactc |
372 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706049 |
gtataatttttttaaacaaagctacattcctttgtagcaaattcaatctggactc |
3706103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University