View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7323_low_2 (Length: 711)

Name: NF7323_low_2
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7323_low_2
NF7323_low_2
[»] chr3 (3 HSPs)
chr3 (302-705)||(52908497-52908900)
chr3 (18-179)||(52909027-52909188)
chr3 (223-254)||(52908951-52908982)
[»] chr1 (1 HSPs)
chr1 (303-705)||(19041553-19041954)
[»] chr5 (2 HSPs)
chr5 (303-694)||(18598135-18598530)
chr5 (434-504)||(22231441-22231511)
[»] chr7 (3 HSPs)
chr7 (451-705)||(47478532-47478786)
chr7 (584-642)||(4343565-4343623)
chr7 (303-336)||(4343465-4343498)
[»] chr6 (3 HSPs)
chr6 (303-577)||(34529496-34529758)
chr6 (302-651)||(12108784-12109136)
chr6 (303-370)||(25210533-25210600)
[»] chr4 (1 HSPs)
chr4 (302-642)||(22626905-22627250)
[»] scaffold0113 (1 HSPs)
scaffold0113 (424-651)||(29957-30184)
[»] chr8 (2 HSPs)
chr8 (497-645)||(26073574-26073722)
chr8 (302-388)||(16011292-16011379)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 302 - 705
Target Start/End: Complemental strand, 52908900 - 52908497
Alignment:
302 gaagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattacaatagaattcagtc 401  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
52908900 gaagaggcaaaaatgaaacatatattaacaataaaagcttcgttccttccgcacaaggagtgttagaaggaatcaagcataattacaatagaattcagtc 52908801  T
402 aaaggctcaataacaacagaaaaaacaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagc 501  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
52908800 aaaggctcaataacaacaaaaaaaacaactaccctatacctaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgaagttagc 52908701  T
502 tgccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcagtccac 601  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
52908700 tgccttcaaccaccagaaagaatggttctgaacctgtaagaacaactgataaatagtattttttgtattgttgaactgcctattattacgctcagtccac 52908601  T
602 aacacccacacacaagccaaccataataattgcataaaagaacgttttttagccgcatgacctaacagataagaaaacttaacaaagtggtcaacaacac 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
52908600 aacacccacacacaagccaaccataataattgcataaaagaacgttttttagccgcatgacctaacagataagaaaactgaacaaagtggtcaacaacat 52908501  T
702 caaa 705  Q
    ||||    
52908500 caaa 52908497  T

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Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 52909188 - 52909027
Alignment:
18 aatgggacttagttcaattcaaaaaccacttatttatcacagaatataacatcatttcacgactttcaaattaaccacaggaagtcatgataaatcattg 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
52909188 aatgggacttaattcaattcaaaaaccacttatttatcacagaatataacatcatttcacgactttcaaattaaccacaggaagtcatgataaatcattg 52909089  T
118 gaacaaaagactaattaagaaatgaattaaataaagtaggcgacttagttagacaaagtctc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
52909088 gaacaaaagactaattaagaaatgaattaaataaagtaggcgacttagttagacaaagtctc 52909027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 254
Target Start/End: Complemental strand, 52908982 - 52908951
Alignment:
223 aaggaattatataatgttaaattaggtgacta 254  Q
    ||||||||||||||||||||||||||||||||    
52908982 aaggaattatataatgttaaattaggtgacta 52908951  T

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Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 303 - 705
Target Start/End: Original strand, 19041553 - 19041954
Alignment:
303 aagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattacaatagaattcagtca 402  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
19041553 aagaggcaaaaatgaaacatatattaacaataaaagctttgttccttccgcacaaggattgctagaaggaaacgagcataattgcaatagaattcagtca 19041652  T
403 aaggctcaataacaacagaaaaaacaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagct 502  Q
    | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
19041653 agggctcaataacagcagaaaa-acaactaccctatacccaaacacggtaacgggcaagcaaaccaattatgaacccctaactcatgaacaacgttagct 19041751  T
503 gccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcagtccaca 602  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
19041752 gccttcagccaccagaaagaatggttttgaacctgtacgaacaactggtaaatattattttctgtattgttgaactgcctgttattacgctcagtccaca 19041851  T
603 acacccacacacaagccaaccataataattgcataaaagaacgttttttagccgcatgacctaacagataagaaaacttaacaaagtggtcaacaacacc 702  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |    
19041852 acacccacacacaagccaaccataacaattgcataaaagaacgttttttagccgcatgacctaacagataagaaaactgaacaaagtggttagcaacatc 19041951  T
703 aaa 705  Q
    |||    
19041952 aaa 19041954  T

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Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 303 - 694
Target Start/End: Complemental strand, 18598530 - 18598135
Alignment:
303 aagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattacaatagaattcagtca 402  Q
    |||||||||||||||| ||||||||||||| ||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
18598530 aagaggcaaaaatgaagcatatattaacaacaaaagcttcgttccttccgcacaaggagtgctagaaggagtcgagcataattacaatagaattcagtca 18598431  T
403 aaggctcaataacaacagaaaaaa--caactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttag 500  Q
    ||||||||| ||||| ||||||||  ||||||||||||||||||  |||||||||||||||||| | ||||| || ||||||||||||||||||||||||    
18598430 aaggctcaaaaacaaaagaaaaaaaacaactaccctatacccaagaacggtaacgggcaagcaagccaattacgagcccctaactcatgaacgacgttag 18598331  T
501 ctgccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagta-ttttctgtattgttgaactacctattattacgctcagtcc 599  Q
     ||||||||||||||| || |||||||||||||||| || |||||||||||||||| || |||| |||||||||||| | ||||||||||||||||||||    
18598330 atgccttcagccaccaaaaggaatggttctgaacctgtacgaacaactgataaataatatttttttgtattgttgaaatgcctattattacgctcagtcc 18598231  T
600 acaacacccacacacaagccaaccataataattgcataaaagaacg-ttttttagccgcatgacctaacagataagaaaacttaacaaagtggtca 694  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||||  ||||||||||||    
18598230 acaacacccacacataagccaaccataacaattgcataaaagaacgtttttttagccgcatgacctaacaggtatgaaaactagacaaagtggtca 18598135  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 504
Target Start/End: Original strand, 22231441 - 22231511
Alignment:
434 cctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagctgc 504  Q
    ||||||||||||||   ||| |||||||| ||| |||||| |||||||||| ||||||| || ||||||||    
22231441 cctatacccaaacaatttaaagggcaagctaaccaattattaacccctaacacatgaacaacattagctgc 22231511  T

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Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 451 - 705
Target Start/End: Original strand, 47478532 - 47478786
Alignment:
451 taacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagctgccttcagccaccagaaagaatggttctgaacctataagaacaactga 550  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||     
47478532 taacgggcaagcaaaccaattatgaacccctaactcatgaacaacgttagctgccttcagccaccagaaagaatggttctgaacctgtacgaacaactgg 47478631  T
551 taaatagtattttctgtattgttgaactacctattattacgctcagtccacaacacccacacacaagccaaccataataattgcataaaagaacgttttt 650  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
47478632 taaatagtattttatgtattgttgaactgcctgttattacgctcagtccacaacacccacacacaagccaaccataacaattgcataaaagaacgttttt 47478731  T
651 tagccgcatgacctaacagataagaaaacttaacaaagtggtcaacaacaccaaa 705  Q
    || |||||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
47478732 taaccgcataacctaacagataagaaaactgaacaaagtggtcagcaacatcaaa 47478786  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 642
Target Start/End: Original strand, 4343565 - 4343623
Alignment:
584 ttattacgctcagtccacaacacccacacacaagccaaccataataattgcataaaaga 642  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| | |||||| |||||    
4343565 ttattacgctcagtccacaacacccacacactagctaaccataaaagttgcatgaaaga 4343623  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 4343465 - 4343498
Alignment:
303 aagaggcaaaaatgaaacatatattaacaataaa 336  Q
    ||||||||||||||||||||||||||||||||||    
4343465 aagaggcaaaaatgaaacatatattaacaataaa 4343498  T

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Target: chr6 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 303 - 577
Target Start/End: Original strand, 34529496 - 34529758
Alignment:
303 aagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattacaatagaattcagtca 402  Q
    ||||| |||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
34529496 aagagccaaaaatgaagcatatattaacaacaaaagcttcctttcttccgcacaaggagtgctagaaggaatcaagcataattacaatagaattcagtca 34529595  T
403 aaggctcaataacaacagaaaaaacaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagct 502  Q
    |||||||||            ||||||||||||||||| |||||||||||||| |||||||||| ||||||||  |||| ||||||||||||||||||||    
34529596 aaggctcaa------------aaacaactaccctatactcaaacacggtaacgagcaagcaaaccaattatgagtccctgactcatgaacgacgttagct 34529683  T
503 gccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaac 577  Q
     ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
34529684 accttcagccaccaaaaataatggttctgaacctatacaaacaactgataaatagtattttctgaattgttgaac 34529758  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 302 - 651
Target Start/End: Complemental strand, 12109136 - 12108784
Alignment:
302 gaagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctaga-aggaatcgagcataattacaatagaattcagt 400  Q
    ||||||||||||||||||| ||||||||||| ||| | || ||| |||||||||||||||||||||| ||||| | | ||| ||||||| ||| ||||||    
12109136 gaagaggcaaaaatgaaacttatattaacaacaaaggcttcgttccttccgcacaaggagtgctagagaggaa-caaccatgattacaacagagttcagt 12109038  T
401 caaaggctcaataacaacagaaaaa---acaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgt 497  Q
    |||| |    | | ||| |||| ||   ||||||| ||||||||||||||| |||| |||||||||||| |||| ||||||||  || || |||| ||||    
12109037 caaaagacacagagcaaaagaacaagaaacaactaacctatacccaaacacagtaaagggcaagcaaaccaattgtgaaccccagacacaagaacaacgt 12108938  T
498 tagctgccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcagt 597  Q
    |||||||||||| ||||||  | ||| |  | ||||||| |   | ||| || | ||||| | |||||||||||||||| | | |||||||||| |||||    
12108937 tagctgccttcatccaccaatatgaacgaatttgaaccttttcaaccaattggtgaatagaactttctgtattgttgaaatgcttattattacgttcagt 12108838  T
598 ccacaacacccacacacaagccaaccataataattgcataaaagaacgtttttt 651  Q
    |||||||||| |||||||||| |||||||| | ||||||||||||||| |||||    
12108837 ccacaacaccaacacacaagctaaccataaaagttgcataaaagaacggttttt 12108784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 25210533 - 25210600
Alignment:
303 aagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaag 370  Q
    |||||||||||||||||| ||||| ||||| |||   |||||| |||||||||||| |||||||||||    
25210533 aagaggcaaaaatgaaacttatatcaacaacaaagactttgttccttccgcacaagaagtgctagaag 25210600  T

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Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 302 - 642
Target Start/End: Original strand, 22626905 - 22627250
Alignment:
302 gaagaggcaaaaatgaaacatatattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattacaatagaattcagtc 401  Q
    ||||||||||||||||||||||||||||||| ||| | || ||| ||||||||||||||| ||||||||||| | | ||||||||||  ||| |||||||    
22626905 gaagaggcaaaaatgaaacatatattaacaacaaaggcttcgttccttccgcacaaggagcgctagaaggaaacaaccataattacacaagagttcagtc 22627004  T
402 aaaggc---tcaataacaac--agaaaaaacaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacg 496  Q
    ||| |    |  | ||||||  | ||||||||  || ||||||||||||||  |||| |||| ||||||| || |  || |||| ||| ||||||| ||     
22627005 aaaagactttggaaaacaacgaacaaaaaacagttagcctatacccaaacaacgtaaagggctagcaaaccaactgcgagccccaaacacatgaacaaca 22627104  T
497 ttagctgccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcag 596  Q
    || | |||||||||||||||  |||||||| | ||||||| |   | ||| |||| ||||| ||||||  | ||||||||||   |||||||||||||||    
22627105 tttgttgccttcagccaccaataagaatggatttgaaccttttcaaccaaatgatgaatagaattttcgatgttgttgaactgtttattattacgctcag 22627204  T
597 tccacaacacccacacacaagccaaccataataattgcataaaaga 642  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||    
22627205 tccataacacccacacacaagctaaccataatagttgcataaaaga 22627250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 424 - 651
Target Start/End: Original strand, 29957 - 30184
Alignment:
424 aaacaactaccctatacccaaacacggtaacgggcaagcaaactaattatgaacccctaactcatgaacgacgttagctgccttcagccaccagaaagaa 523  Q
    ||||||||| ||||||||||||||  |||| | |||||||||| |||| |||||||| ||| ||||||| |||||||||||||||| ||| ||  | |||    
29957 aaacaactaacctatacccaaacaaagtaaagagcaagcaaaccaattgtgaaccccaaacacatgaacaacgttagctgccttcatccaacaatatgaa 30056  T
524 tggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcagtccacaacacccacacacaagccaacc 623  Q
    ||  | ||||||| |   | ||| || | ||| |  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
30057 tgaatttgaaccttttcaaccaattggtgaatggagttttctgtgttgttgaacttcctattattacgctcagtccacaacacccacacacaagctaacc 30156  T
624 ataataattgcataaaagaacgtttttt 651  Q
    |||| | |||| |||||||||| |||||    
30157 ataaaagttgcttaaaagaacggttttt 30184  T

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Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 497 - 645
Target Start/End: Original strand, 26073574 - 26073722
Alignment:
497 ttagctgccttcagccaccagaaagaatggttctgaacctataagaacaactgataaatagtattttctgtattgttgaactacctattattacgctcag 596  Q
    ||||||||||| ||||||||  |||||||| | ||||||| |  || ||| |||| ||||| ||||||  | ||||||||||  ||||||||||||||||    
26073574 ttagctgcctttagccaccaataagaatggatttgaaccttttcgaccaattgatgaatagaattttcaatgttgttgaactgtctattattacgctcag 26073673  T
597 tccacaacacccacacacaagccaaccataataattgcataaaagaacg 645  Q
    |||||||||||||||||||||| |||||||| | |||| | ||||||||    
26073674 tccacaacacccacacacaagctaaccataacagttgcttgaaagaacg 26073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 16011379 - 16011292
Alignment:
302 gaagaggcaaaaatgaaacat-atattaacaataaaagttttgtttcttccgcacaaggagtgctagaaggaatcgagcataattaca 388  Q
    |||||| ||||| |||||| | |||||||||| ||||| || ||| |||||||||||||||||||||||| || |||  |||||||||    
16011379 gaagagacaaaattgaaactttatattaacaacaaaagcttcgttccttccgcacaaggagtgctagaagaaaacgactataattaca 16011292  T

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