View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_25 (Length: 263)
Name: NF7323_low_25
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_25 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 40461642 - 40461441
Alignment:
| Q |
56 |
aatgttattattatatattgaaatttgttctcttacccatttatgagataaaatatgcttaaaagttttggtttttgaaggtgggattgctgaatgttga |
155 |
Q |
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| T |
40461642 |
aatgttattattatatattgaaatttgttctcttacccgtttatgagataaaatatgcttaaaagttttggtttttgaaggtgggattgctgaatgttga |
40461543 |
T |
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| Q |
156 |
tggatactacaattcctttttgactttcattgacaaagctgtggaggaaggattcattagccccacagctcgccatataattgtgtctgccccaacacca |
255 |
Q |
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| T |
40461542 |
tggatactacaattcctttttgactttcattgacaaagctgtggaggaaggattcattagccccacagctcgccatataattgtgtctgccccaacacca |
40461443 |
T |
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| Q |
256 |
aa |
257 |
Q |
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|| |
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| T |
40461442 |
aa |
40461441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 21627997 - 21628109
Alignment:
| Q |
133 |
aaggtgggattgctgaatgttgatggatactacaattcctttttgactttcattgacaaagctgtggaggaaggattcattagccccacagctcgccata |
232 |
Q |
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|||||||| ||| ||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |
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| T |
21627997 |
aaggtggggttgttgaatgtagatggctactacaattctttgttatctttcattgacaaagctgtggaggaaggcttcattagccctaaagctcgtcata |
21628096 |
T |
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| Q |
233 |
taattgtgtctgc |
245 |
Q |
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| T |
21628097 |
taattgtatctgc |
21628109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 79269 - 79336
Alignment:
| Q |
148 |
aatgttgatggatactacaattcctttttgactttcattgacaaagctgtggaggaaggattcattag |
215 |
Q |
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| T |
79269 |
aatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattag |
79336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 40887015 - 40886948
Alignment:
| Q |
148 |
aatgttgatggatactacaattcctttttgactttcattgacaaagctgtggaggaaggattcattag |
215 |
Q |
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| T |
40887015 |
aatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattag |
40886948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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