View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7323_low_26 (Length: 260)

Name: NF7323_low_26
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7323_low_26
NF7323_low_26
[»] chr3 (3 HSPs)
chr3 (1-248)||(11897158-11897405)
chr3 (35-248)||(26432588-26432801)
chr3 (63-147)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (1-248)||(23132475-23132722)
chr8 (44-147)||(26587277-26587380)
chr8 (85-243)||(14760016-14760174)
[»] chr2 (11 HSPs)
chr2 (1-248)||(14653570-14653817)
chr2 (1-144)||(26791328-26791471)
chr2 (47-156)||(16322502-16322611)
chr2 (5-141)||(40328189-40328325)
chr2 (47-141)||(35135219-35135313)
chr2 (47-144)||(573245-573342)
chr2 (47-141)||(3779048-3779142)
chr2 (44-144)||(177549-177649)
chr2 (93-144)||(35062956-35063007)
chr2 (47-129)||(19265469-19265551)
chr2 (63-149)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-248)||(20284859-20285106)
chr1 (47-156)||(50236550-50236659)
chr1 (47-144)||(50451951-50452048)
chr1 (47-105)||(23465403-23465461)
[»] scaffold0036 (1 HSPs)
scaffold0036 (54-144)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (38-144)||(32874457-32874563)
chr5 (1-144)||(7817142-7817285)
[»] chr4 (5 HSPs)
chr4 (35-141)||(54477407-54477513)
chr4 (37-147)||(14307826-14307936)
chr4 (37-147)||(14291777-14291887)
chr4 (47-144)||(3881771-3881868)
chr4 (44-147)||(46784469-46784572)
[»] chr6 (4 HSPs)
chr6 (47-147)||(24893833-24893933)
chr6 (63-147)||(24990660-24990744)
chr6 (47-153)||(13599639-13599745)
chr6 (47-104)||(35233542-35233599)
[»] chr7 (2 HSPs)
chr7 (47-150)||(16769956-16770059)
chr7 (8-141)||(1353794-1353927)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 11897158 - 11897405
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11897158 caagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggt 11897257  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  11897258 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaaatca 11897357  T
Q  201 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897358 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 26432801 - 26432588
Alignment:
Q  35 tactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 134  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  26432801 tactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccattgtccccttatctcttcatcatttgca 26432702  T
Q  135 tggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacggggccgcatttatcccatctcctatt 234  Q
    |||||||||| || |||||||| ||||| || ||| ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||||| ||    
T  26432701 tggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaaatcactcctacggggccgcatttatcccacctcctttt 26432602  T
Q  235 tgcagatgatgtcc 248  Q
    |||| |||||||||    
T  26432601 tgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  63 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 147  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 23132722 - 23132475
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23132722 caagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggt 23132623  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatca 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23132622 gatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatca 23132523  T
Q  201 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 248  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132522 cccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  44 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 143  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  144 tttc 147  Q
    ||||    
T  26587377 tttc 26587380  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  85 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 184  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  185 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 243  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

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Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14653817 - 14653570
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  14653817 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaacaaggt 14653718  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatca 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14653717 gatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaaatca 14653618  T
Q  201 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 248  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653617 ctcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 26791328 - 26791471
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    |||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| | || |||    
T  26791328 caagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcagggt 26791427  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791428 gatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 146  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  147 cagctgctat 156  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 40328189 - 40328325
Alignment:
Q  5 ctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 104  Q
    |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| |    
T  40328189 ctcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgacc 40328288  T
Q  105 cgttgtccccttatcttttcatcctttgcatggaaaa 141  Q
    ||||||| ||||||||||||||||| || ||||||||    
T  40328289 cgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 35135313 - 35135219
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 141  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135313 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 3779142 - 3779048
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 141  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779142 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 177549 - 177649
Alignment:
Q  44 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 143  Q
    ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  |||||||||| || ||||| ||||| || |||||| | |||||||||||||    
T  177549 ctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagc 177648  T
Q  144 t 144  Q
    |    
T  177649 t 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  93 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 129  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  63 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 149  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

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Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 20284859 - 20285106
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| |||||||| |||||||||    
T  20284859 caagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgacaaggt 20284958  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20284959 gatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatca 20285058  T
Q  201 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285059 cccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 50236659 - 50236550
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 146  Q
    ||||| ||||||||| |||| |||||||||||| | ||||||||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |    
T  50236659 tggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactat 50236560  T
Q  147 cagctgctat 156  Q
    ||| ||||||    
T  50236559 cagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 50451951 - 50452048
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451951 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 105  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

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Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  54 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  38 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 137  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  138 aaaagct 144  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7817142 - 7817285
Alignment:
Q  1 caagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggt 100  Q
    |||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| ||| |||| |||    
T  7817142 caagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggt 7817241  T
Q  101 gatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    || || || || ||||| |||||||| |||||||||||||||||    
T  7817242 gaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 54477513 - 54477407
Alignment:
Q  35 tactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 134  Q
    |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| || || ||||||||||| |||||||||||||| ||||| |||||||    
T  54477513 tactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtccccttatctcttcattctttgca 54477414  T
Q  135 tggaaaa 141  Q
    |||||||    
T  54477413 tggaaaa 54477407  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  37 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 136  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  137 gaaaagctttc 147  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  37 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 136  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  137 gaaaagctttc 147  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 144  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  44 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 143  Q
    ||||||||||| || || |||||||||||||| ||| | ||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  144 tttc 147  Q
    ||||    
T  46784472 tttc 46784469  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 24893933 - 24893833
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 146  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || ||||||||||||||||    
T  24893933 tggaatggtaacaaaatgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagcttt 24893834  T
Q  147 c 147  Q
    |    
T  24893833 c 24893833  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  63 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 147  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 146  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  147 cagctgc 153  Q
    |||||||    
T  13599739 cagctgc 13599745  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 104  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  47 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 146  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  147 cagc 150  Q
    ||||    
T  16769959 cagc 16769956  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  8 atcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 107  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  108 tgtccccttatcttttcatcctttgcatggaaaa 141  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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