View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7323_low_28 (Length: 231)

Name: NF7323_low_28
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7323_low_28
NF7323_low_28
[»] chr7 (51 HSPs)
chr7 (1-122)||(33691477-33691598)
chr7 (1-96)||(9709610-9709705)
chr7 (3-122)||(13880392-13880511)
chr7 (1-96)||(14426800-14426895)
chr7 (2-95)||(16111660-16111754)
chr7 (3-122)||(30026179-30026298)
chr7 (3-92)||(15088777-15088866)
chr7 (2-95)||(35952449-35952542)
chr7 (1-122)||(2500311-2500432)
chr7 (20-96)||(48236711-48236787)
chr7 (34-122)||(23279791-23279879)
chr7 (10-122)||(28409329-28409441)
chr7 (1-72)||(30944157-30944228)
chr7 (2-95)||(12174102-12174195)
chr7 (1-81)||(2913413-2913493)
chr7 (1-122)||(13648985-13649106)
chr7 (1-122)||(14193361-14193486)
chr7 (1-96)||(16542814-16542908)
chr7 (1-96)||(16622754-16622848)
chr7 (1-96)||(28622143-28622238)
chr7 (1-96)||(33605973-33606068)
chr7 (3-81)||(10882965-10883043)
chr7 (3-81)||(11319693-11319771)
chr7 (3-122)||(11793195-11793314)
chr7 (3-81)||(16316368-16316446)
chr7 (3-122)||(44467338-44467457)
chr7 (1-81)||(13692627-13692707)
chr7 (29-96)||(15469781-15469848)
chr7 (1-72)||(30945190-30945261)
chr7 (3-122)||(4494761-4494880)
chr7 (3-81)||(13137716-13137794)
chr7 (32-122)||(22577771-22577862)
chr7 (3-81)||(48800433-48800511)
chr7 (2-96)||(2265308-2265404)
chr7 (3-122)||(9069868-9069980)
chr7 (3-81)||(13303109-13303187)
chr7 (3-81)||(13730502-13730579)
chr7 (4-122)||(12366501-12366619)
chr7 (3-72)||(24788381-24788450)
chr7 (20-96)||(7339660-7339736)
chr7 (3-46)||(16556576-16556619)
chr7 (3-46)||(16609043-16609086)
chr7 (3-81)||(21695658-21695736)
chr7 (23-81)||(29935170-29935228)
chr7 (3-50)||(8183234-8183282)
chr7 (3-50)||(27871983-27872031)
chr7 (3-122)||(331938-332057)
chr7 (7-49)||(1293258-1293301)
chr7 (3-96)||(5826254-5826349)
chr7 (18-72)||(19710800-19710855)
chr7 (3-50)||(32264546-32264594)
[»] chr2 (45 HSPs)
chr2 (3-122)||(22317898-22318017)
chr2 (1-96)||(20151771-20151866)
chr2 (3-122)||(23235293-23235412)
chr2 (3-122)||(38781666-38781785)
chr2 (1-81)||(25829388-25829468)
chr2 (2-96)||(28700932-28701027)
chr2 (1-96)||(28711433-28711529)
chr2 (3-122)||(13963705-13963824)
chr2 (3-96)||(1586760-1586855)
chr2 (3-81)||(30667275-30667353)
chr2 (3-96)||(9015092-9015185)
chr2 (1-81)||(22260689-22260769)
chr2 (2-96)||(31800606-31800701)
chr2 (2-52)||(30557053-30557103)
chr2 (7-96)||(45086855-45086945)
chr2 (3-95)||(31327677-31327770)
chr2 (3-95)||(31334398-31334491)
chr2 (1-81)||(20568485-20568565)
chr2 (9-122)||(30621479-30621592)
chr2 (9-122)||(30624100-30624213)
chr2 (2-96)||(34321624-34321720)
chr2 (2-61)||(6392921-6392980)
chr2 (3-119)||(25036966-25037082)
chr2 (3-119)||(25041073-25041189)
chr2 (3-81)||(18376673-18376751)
chr2 (1-94)||(6573861-6573954)
chr2 (1-81)||(38631238-38631318)
chr2 (2-96)||(22802759-22802854)
chr2 (3-81)||(19540684-19540762)
chr2 (3-81)||(22187855-22187933)
chr2 (3-81)||(24850402-24850480)
chr2 (3-52)||(10009533-10009582)
chr2 (3-72)||(24377356-24377425)
chr2 (3-52)||(28140400-28140449)
chr2 (3-50)||(22776079-22776127)
chr2 (3-50)||(22781457-22781505)
chr2 (3-122)||(31967744-31967865)
chr2 (4-52)||(40782757-40782805)
chr2 (3-50)||(44840709-44840757)
chr2 (3-92)||(3277274-3277365)
chr2 (3-52)||(23184112-23184161)
chr2 (3-52)||(23595369-23595418)
chr2 (3-52)||(39037422-39037471)
chr2 (3-51)||(22454757-22454805)
chr2 (3-50)||(40332366-40332414)
[»] chr8 (41 HSPs)
chr8 (3-96)||(21933185-21933278)
chr8 (1-122)||(18120872-18120993)
chr8 (1-96)||(30421216-30421311)
chr8 (3-96)||(16189283-16189376)
chr8 (3-96)||(17441597-17441690)
chr8 (3-122)||(20382144-20382263)
chr8 (3-122)||(22745754-22745873)
chr8 (20-96)||(23185016-23185092)
chr8 (20-95)||(16207556-16207631)
chr8 (3-81)||(20255357-20255435)
chr8 (2-96)||(1237951-1238046)
chr8 (2-96)||(24832828-24832923)
chr8 (2-96)||(45538228-45538323)
chr8 (2-95)||(9320869-9320963)
chr8 (3-96)||(15335815-15335909)
chr8 (3-96)||(15424880-15424974)
chr8 (3-96)||(15516184-15516278)
chr8 (3-81)||(19156466-19156544)
chr8 (1-81)||(16681095-16681173)
chr8 (2-122)||(40845118-40845240)
chr8 (3-122)||(6408001-6408122)
chr8 (3-122)||(14989205-14989325)
chr8 (1-77)||(17525523-17525599)
chr8 (2-96)||(36105509-36105605)
chr8 (1-72)||(29693599-29693670)
chr8 (15-81)||(17267767-17267833)
chr8 (3-81)||(39693819-39693897)
chr8 (3-95)||(19943520-19943613)
chr8 (1-96)||(17797703-17797800)
chr8 (3-122)||(18151410-18151530)
chr8 (9-96)||(19927335-19927423)
chr8 (3-96)||(13430406-13430501)
chr8 (23-122)||(602483-602582)
chr8 (7-81)||(17914747-17914821)
chr8 (3-122)||(24646621-24646740)
chr8 (3-52)||(33083140-33083189)
chr8 (2-96)||(3598102-3598198)
chr8 (3-81)||(17702010-17702088)
chr8 (3-122)||(18320939-18321058)
chr8 (2-50)||(24551588-24551636)
chr8 (3-50)||(45292894-45292942)
[»] chr6 (42 HSPs)
chr6 (1-96)||(32544558-32544653)
chr6 (1-122)||(18435864-18435985)
chr6 (3-122)||(26971948-26972067)
chr6 (1-96)||(21235387-21235482)
chr6 (1-96)||(22802415-22802510)
chr6 (3-121)||(19689008-19689126)
chr6 (1-96)||(16264930-16265025)
chr6 (1-96)||(15954977-15955073)
chr6 (1-122)||(21625388-21625509)
chr6 (1-96)||(20730484-20730579)
chr6 (1-96)||(34451448-34451543)
chr6 (7-118)||(13435828-13435939)
chr6 (2-95)||(20487666-20487759)
chr6 (1-81)||(9718133-9718213)
chr6 (1-122)||(15531361-15531482)
chr6 (2-96)||(19832764-19832859)
chr6 (3-81)||(13602447-13602525)
chr6 (2-91)||(139136-139225)
chr6 (2-91)||(147157-147246)
chr6 (2-92)||(17381721-17381812)
chr6 (3-96)||(16877506-16877600)
chr6 (3-81)||(19086442-19086520)
chr6 (1-96)||(29918291-29918388)
chr6 (2-122)||(21618526-21618648)
chr6 (3-96)||(12349254-12349349)
chr6 (3-96)||(12423514-12423609)
chr6 (3-96)||(22058344-22058439)
chr6 (3-81)||(19624254-19624332)
chr6 (3-81)||(24117120-24117198)
chr6 (3-72)||(18378545-18378614)
chr6 (1-72)||(12715223-12715294)
chr6 (1-122)||(33351681-33351804)
chr6 (3-96)||(14100237-14100330)
chr6 (1-81)||(15302461-15302541)
chr6 (5-81)||(15987488-15987564)
chr6 (2-96)||(16336445-16336540)
chr6 (3-81)||(25597754-25597832)
chr6 (3-78)||(19065805-19065882)
chr6 (7-122)||(20112452-20112567)
chr6 (20-72)||(17608107-17608160)
chr6 (28-81)||(18383955-18384008)
chr6 (3-52)||(23284855-23284904)
[»] chr3 (47 HSPs)
chr3 (1-96)||(18121396-18121491)
chr3 (1-96)||(47207999-47208094)
chr3 (1-122)||(28582396-28582517)
chr3 (1-96)||(2561463-2561564)
chr3 (2-96)||(50300508-50300602)
chr3 (1-96)||(11869375-11869470)
chr3 (1-92)||(47405230-47405321)
chr3 (3-122)||(31303680-31303799)
chr3 (3-122)||(52920696-52920815)
chr3 (3-92)||(20627258-20627347)
chr3 (1-96)||(11223836-11223931)
chr3 (3-96)||(40800117-40800210)
chr3 (3-122)||(6091023-6091142)
chr3 (2-122)||(49553237-49553359)
chr3 (123-207)||(25631909-25631993)
chr3 (2-93)||(29855716-29855808)
chr3 (1-96)||(53056502-53056598)
chr3 (1-96)||(14969603-14969698)
chr3 (3-81)||(17238744-17238822)
chr3 (3-81)||(41495265-41495343)
chr3 (2-95)||(33583552-33583645)
chr3 (2-95)||(33598172-33598265)
chr3 (2-96)||(38177464-38177558)
chr3 (3-81)||(13948627-13948705)
chr3 (3-122)||(14392755-14392874)
chr3 (3-81)||(20646446-20646524)
chr3 (3-81)||(49642569-49642647)
chr3 (2-96)||(2785386-2785482)
chr3 (2-96)||(5216277-5216373)
chr3 (6-96)||(14955752-14955843)
chr3 (7-81)||(15903494-15903568)
chr3 (2-96)||(24775273-24775370)
chr3 (3-81)||(37467593-37467671)
chr3 (3-96)||(12726038-12726131)
chr3 (3-96)||(40851252-40851347)
chr3 (3-72)||(22141034-22141104)
chr3 (1-42)||(16658475-16658516)
chr3 (3-50)||(2028576-2028624)
chr3 (32-84)||(13824354-13824406)
chr3 (3-50)||(21606325-21606373)
chr3 (10-81)||(12962891-12962962)
chr3 (3-96)||(21605417-21605514)
chr3 (3-96)||(21636433-21636530)
chr3 (3-81)||(22803891-22803969)
chr3 (27-92)||(46349606-46349672)
chr3 (4-96)||(49666171-49666265)
chr3 (3-50)||(46796196-46796244)
[»] chr1 (37 HSPs)
chr1 (3-122)||(32785622-32785741)
chr1 (1-122)||(22599851-22599972)
chr1 (1-122)||(36134463-36134584)
chr1 (3-122)||(22154165-22154284)
chr1 (1-122)||(16234981-16235102)
chr1 (1-122)||(22427028-22427149)
chr1 (1-81)||(1900622-1900702)
chr1 (2-96)||(25448228-25448323)
chr1 (1-96)||(29216072-29216167)
chr1 (3-81)||(1578124-1578202)
chr1 (2-95)||(2327104-2327198)
chr1 (1-96)||(2834979-2835075)
chr1 (1-81)||(38282872-38282952)
chr1 (1-96)||(2268817-2268912)
chr1 (20-96)||(39200720-39200796)
chr1 (1-96)||(2267345-2267440)
chr1 (3-81)||(19717796-19717874)
chr1 (7-81)||(28492146-28492220)
chr1 (2-122)||(44821212-44821334)
chr1 (3-94)||(10251283-10251376)
chr1 (4-72)||(20954174-20954242)
chr1 (1-96)||(22464486-22464582)
chr1 (1-96)||(7310093-7310185)
chr1 (3-122)||(21703121-21703242)
chr1 (3-81)||(10757696-10757773)
chr1 (1-42)||(35040439-35040480)
chr1 (3-50)||(23025053-23025101)
chr1 (3-96)||(21120764-21120859)
chr1 (3-96)||(21984863-21984958)
chr1 (3-96)||(30572457-30572552)
chr1 (1-72)||(33256072-33256143)
chr1 (1-72)||(33276244-33276315)
chr1 (3-81)||(48704491-48704569)
chr1 (3-52)||(12284730-12284779)
chr1 (1-96)||(21204625-21204722)
chr1 (39-96)||(35402146-35402203)
chr1 (3-50)||(21134907-21134955)
[»] chr4 (37 HSPs)
chr4 (1-96)||(13575877-13575972)
chr4 (1-96)||(10073206-10073301)
chr4 (3-122)||(37435228-37435347)
chr4 (12-96)||(3497928-3498012)
chr4 (1-122)||(45833679-45833800)
chr4 (3-81)||(3395911-3395989)
chr4 (3-122)||(56034844-56034963)
chr4 (3-96)||(14604640-14604733)
chr4 (1-96)||(54680181-54680276)
chr4 (3-96)||(3793376-3793469)
chr4 (3-122)||(19620799-19620918)
chr4 (2-96)||(55732079-55732173)
chr4 (1-81)||(9141146-9141226)
chr4 (1-96)||(29121657-29121753)
chr4 (2-81)||(14904067-14904146)
chr4 (1-122)||(19884972-19885095)
chr4 (3-122)||(12810901-12811020)
chr4 (3-96)||(16853765-16853858)
chr4 (3-80)||(55380528-55380605)
chr4 (1-96)||(22675283-22675378)
chr4 (2-96)||(6517771-6517868)
chr4 (2-69)||(8105955-8106023)
chr4 (1-81)||(12601384-12601464)
chr4 (4-96)||(25650872-25650966)
chr4 (1-96)||(17247543-17247639)
chr4 (3-96)||(16940247-16940346)
chr4 (1-122)||(3105157-3105280)
chr4 (7-81)||(16632728-16632802)
chr4 (3-81)||(29680306-29680384)
chr4 (2-96)||(10693137-10693233)
chr4 (2-96)||(10906903-10906999)
chr4 (3-50)||(14571312-14571360)
chr4 (3-50)||(22191126-22191174)
chr4 (3-81)||(40846368-40846447)
chr4 (5-96)||(39419471-39419564)
chr4 (3-44)||(40860961-40861002)
chr4 (1-122)||(14153685-14153808)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-122)||(7979-8100)
[»] scaffold0217 (3 HSPs)
scaffold0217 (4-96)||(19327-19419)
scaffold0217 (3-96)||(9853-9948)
scaffold0217 (1-96)||(21841-21938)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-122)||(103846-103967)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-122)||(143380-143501)
[»] scaffold1359 (1 HSPs)
scaffold1359 (1-96)||(414-509)
[»] chr5 (31 HSPs)
chr5 (7-122)||(7745393-7745508)
chr5 (1-95)||(33022934-33023028)
chr5 (1-81)||(21910812-21910892)
chr5 (1-96)||(5430154-5430249)
chr5 (1-96)||(31118146-31118241)
chr5 (1-72)||(26784627-26784698)
chr5 (2-90)||(33933589-33933678)
chr5 (2-96)||(15517257-15517353)
chr5 (1-81)||(17815253-17815333)
chr5 (1-72)||(14086333-14086404)
chr5 (3-122)||(20551149-20551269)
chr5 (2-90)||(26759467-26759556)
chr5 (3-122)||(9089199-9089320)
chr5 (3-81)||(6512235-6512313)
chr5 (3-96)||(11994202-11994296)
chr5 (4-81)||(21072028-21072105)
chr5 (1-96)||(29138163-29138260)
chr5 (3-96)||(3245194-3245289)
chr5 (2-72)||(4887293-4887364)
chr5 (3-96)||(30115645-30115740)
chr5 (2-96)||(42243984-42244079)
chr5 (3-81)||(89224-89302)
chr5 (3-81)||(23412778-23412856)
chr5 (2-96)||(28139858-28139954)
chr5 (1-52)||(41566248-41566299)
chr5 (2-91)||(30743298-30743388)
chr5 (3-52)||(12352635-12352684)
chr5 (3-50)||(10849054-10849102)
chr5 (3-96)||(25929933-25930027)
chr5 (3-52)||(21198838-21198887)
chr5 (15-51)||(6499520-6499556)
[»] scaffold1331 (1 HSPs)
scaffold1331 (3-96)||(336-429)
[»] scaffold0227 (1 HSPs)
scaffold0227 (3-96)||(22952-23045)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-96)||(89797-89892)
[»] scaffold0005 (2 HSPs)
scaffold0005 (3-96)||(212645-212738)
scaffold0005 (3-50)||(246016-246064)
[»] scaffold0485 (1 HSPs)
scaffold0485 (3-96)||(9103-9195)
[»] scaffold0116 (1 HSPs)
scaffold0116 (3-96)||(20697-20790)
[»] scaffold0439 (1 HSPs)
scaffold0439 (3-122)||(6408-6528)
[»] scaffold0359 (1 HSPs)
scaffold0359 (3-122)||(5391-5511)
[»] scaffold0012 (1 HSPs)
scaffold0012 (2-96)||(215206-215301)
[»] scaffold0171 (1 HSPs)
scaffold0171 (3-122)||(27145-27264)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-81)||(8186-8266)
scaffold0026 (1-122)||(60305-60426)
[»] scaffold0452 (1 HSPs)
scaffold0452 (2-96)||(1593-1688)
[»] scaffold0043 (1 HSPs)
scaffold0043 (2-96)||(78090-78185)
[»] scaffold0334 (1 HSPs)
scaffold0334 (3-122)||(10085-10204)
[»] scaffold0243 (1 HSPs)
scaffold0243 (3-81)||(4751-4829)
[»] scaffold0146 (1 HSPs)
scaffold0146 (3-81)||(15377-15455)
[»] scaffold0083 (1 HSPs)
scaffold0083 (3-81)||(25733-25811)
[»] scaffold0022 (2 HSPs)
scaffold0022 (3-81)||(39703-39781)
scaffold0022 (3-81)||(137763-137841)
[»] scaffold0479 (1 HSPs)
scaffold0479 (3-96)||(10228-10321)
[»] scaffold0426 (1 HSPs)
scaffold0426 (1-81)||(13901-13981)
[»] scaffold0861 (1 HSPs)
scaffold0861 (3-82)||(4687-4766)
[»] scaffold0411 (1 HSPs)
scaffold0411 (2-122)||(12501-12621)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-88)||(1920-2007)
[»] scaffold0028 (1 HSPs)
scaffold0028 (2-96)||(5311-5406)
[»] scaffold0771 (1 HSPs)
scaffold0771 (3-81)||(767-845)
[»] scaffold0290 (1 HSPs)
scaffold0290 (3-81)||(18362-18440)
[»] scaffold0066 (1 HSPs)
scaffold0066 (3-122)||(60585-60704)
[»] scaffold1434 (1 HSPs)
scaffold1434 (1-57)||(552-608)
[»] scaffold0471 (1 HSPs)
scaffold0471 (2-96)||(3626-3722)
[»] scaffold0084 (2 HSPs)
scaffold0084 (1-81)||(32762-32842)
scaffold0084 (1-82)||(49608-49688)
[»] scaffold0065 (1 HSPs)
scaffold0065 (3-79)||(1995-2071)
[»] scaffold0527 (2 HSPs)
scaffold0527 (3-96)||(162-256)
scaffold0527 (3-96)||(8225-8319)
[»] scaffold0337 (1 HSPs)
scaffold0337 (7-81)||(14957-15031)
[»] scaffold0161 (1 HSPs)
scaffold0161 (3-122)||(9838-9956)
[»] scaffold0120 (2 HSPs)
scaffold0120 (15-122)||(36476-36583)
scaffold0120 (15-122)||(42422-42529)
[»] scaffold0004 (3 HSPs)
scaffold0004 (3-81)||(377317-377395)
scaffold0004 (3-81)||(30612-30689)
scaffold0004 (3-81)||(220528-220607)
[»] scaffold0015 (1 HSPs)
scaffold0015 (2-96)||(61095-61191)
[»] scaffold0035 (2 HSPs)
scaffold0035 (3-122)||(19174-19294)
scaffold0035 (7-96)||(98901-98992)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-50)||(23350-23400)
[»] scaffold0414 (1 HSPs)
scaffold0414 (3-96)||(6862-6958)
[»] scaffold0275 (1 HSPs)
scaffold0275 (3-66)||(8576-8640)
[»] scaffold0045 (1 HSPs)
scaffold0045 (3-96)||(87325-87420)
[»] scaffold0261 (1 HSPs)
scaffold0261 (3-81)||(5695-5773)
[»] scaffold0607 (1 HSPs)
scaffold0607 (1-96)||(7204-7301)
[»] scaffold0395 (1 HSPs)
scaffold0395 (4-81)||(13275-13352)
[»] scaffold0324 (1 HSPs)
scaffold0324 (3-52)||(10229-10278)
[»] scaffold0193 (1 HSPs)
scaffold0193 (3-52)||(16071-16120)
[»] scaffold0249 (1 HSPs)
scaffold0249 (3-50)||(17544-17592)
[»] scaffold0011 (1 HSPs)
scaffold0011 (3-50)||(65198-65246)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33691598 - 33691477
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||        
T  33691598 gtcttcaggagcagttctcttcagacgctttaaacttcctttttgttgattcctttgctctctattgttcttccagaacctttttaagatgtcaaatttt 33691499  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  33691498 tgtctatggtcctgtacacttg 33691477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9709705 - 9709610
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  9709705 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctctctattgttcttccaagacctttttaagatgtcaaa 9709610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 13880392 - 13880511
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||| ||||||||||||||          
T  13880392 cttcagaagcacttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacctatttaagatgtcaaatttatg 13880491  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  13880492 tctatggtcctgtacacttg 13880511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 14426800 - 14426895
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  14426800 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 14426895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 16111754 - 16111660
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttc-agaacctttttaagatgtcaa 95  Q
    |||||||||||| || | ||||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||| | |||||||||||||||    
T  16111754 tcttcaggagcatttttcttcagacgctttaagcttcctttttgttgattccttttctctttattgttcttccaagaccttttttaagatgtcaa 16111660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 30026179 - 30026298
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| |||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| || ||||| ||||||||||||||          
T  30026179 cttcagaagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccataacctatttaagatgtcaaatttttg 30026278  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  30026279 tctatggtcctgtacacttg 30026298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 15088777 - 15088866
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgt 92  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| |||||||| ||||||||||    
T  15088777 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccagaacctatttaagatgt 15088866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 35952542 - 35952449
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||   |||||||||||||||||    
T  35952542 tcttcaagagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaaggcctttttaagatgtcaa 35952449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2500311 - 2500432
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| || ||||| ||||||||||||||        
T  2500311 gtcttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccataacctatttaagatgtcaaatttt 2500410  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||| ||||||||||    
T  2500411 tgtctatggtcttgtacacttg 2500432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 48236787 - 48236711
Alignment:
Q  20 ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  48236787 ttcagacgctttaagcttcctttttgttgattcctttactctttattgttcttccaagacctttttaagatgtcaaa 48236711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 23279879 - 23279791
Alignment:
Q  34 gcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatggtcctgtacacttg 122  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||       |||||||||||||||||||    
T  23279879 gcttcctttttgttgattcttttgctctctattgttcttccagaacctttttatgatgtcaaatttttgtctatggtcctgtacacttg 23279791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 28409329 - 28409441
Alignment:
Q  10 agcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatgg 109  Q
    |||| |||| ||||||||||| || |||||||||||| ||||||||| |||||| |||||||| |||||||| ||||||||||||||       ||||||    
T  28409329 agcacttctcttcagacgcttcaaacttcctttttgtcgattcatttgctctcttttgttcttacagaacctatttaagatgtcaaatttttgtctatgg 28409428  T
Q  110 tcctgtacacttg 122  Q
    ||| |||||||||    
T  28409429 tccagtacacttg 28409441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30944228 - 30944157
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  30944228 gtcttcaggagcagttttcttcaaacgctttaagcttcctttttgttgattcatttgctctttattgttctt 30944157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 12174195 - 12174102
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||||||| |||| | |||||||| |||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  12174195 tcttcaggagtagttttcttcagacgttttaagcttcttttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaa 12174102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2913493 - 2913413
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| |||| | |||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  2913493 gtcttcaggagcacttctcttcatatgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 2913413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13648985 - 13649106
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||| |||||| ||||||||  |||||||  | ||||| |||||        
T  13648985 gtcttcaggagcacttctcttcagacgccttaaacttcctttttgttgattcctttgctctcttttgttcttctagaacctaataaagatatcaaatttt 13649084  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  13649085 tgtctatggtcctgtacacttg 13649106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 14193361 - 14193486
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc----attttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||  |||| ||||||||||| ||||||| |||||||||||||    |||  |||||| |||||||| |||||||||||||||||||||||    
T  14193361 gtcttcaggagcgcttctcttcagacgcttcaagcttcatttttgttgattctttaattagctctcttttgttcttccagaacctttttaagatgtcaaa 14193460  T
Q  97 nnnnnnnctatggtcctgtacacttg 122  Q
           |||||||| ||||||||||    
T  14193461 tttttgtctatggtcttgtacacttg 14193486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16542908 - 16542814
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| ||||||| | ||||||||||| ||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||| ||||    
T  16542908 gtcttcagaagcagttttcttcagacgctt-aagcttcctttttgttgattcctttgctctttattgttcttccaacacctttttaagatgacaaa 16542814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16622754 - 16622848
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| ||||||| | ||||||||||| ||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||| ||||    
T  16622754 gtcttcagaagcagttttcttcagacgctt-aagcttcctttttgttgattcctttgctctttattgttcttccaacacctttttaagatgacaaa 16622848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28622238 - 28622143
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||| |||||||  | |||| |||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  28622238 gtcttcatgagcagtattcttcatacgctttaagcttcatttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 28622143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33605973 - 33606068
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| ||||| | |||||| | ||||||||||||| |||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  33605973 gtcttcaggaacagttttcttcagatgttttaagcttccttattgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 33606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 10883043 - 10882965
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| |||| ||||||||||||||||||| ||||||||||||| ||| |||||| |||||||| ||||||||    
T  10883043 cttcagtagcacttctcttcagacgctttaagcttcatttttgttgattcctttgctctcttttgttcttccagaacct 10882965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 11319693 - 11319771
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||   || |||||| |||||||| ||||||||    
T  11319693 cttcaggagcacttctcttcagacgctttaagcttcctttttgttgatttcattgctctcttttgttcttccagaacct 11319771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 11793195 - 11793314
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| | ||||||  | ||||| |||||          
T  11793195 cttcaggagcacttcttttcagatgcttcaagcttcctttttgttgattccttcgctctcttttgttcttcctgaacctaataaagatatcaaatttttg 11793294  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  11793295 tctatggtcctgtacacttg 11793314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 16316446 - 16316368
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| || |||||||| ||||||||||||||||||||| ||  |||||| |||||||||||||||||    
T  16316446 cttcaggagcacttctctttagacgcttcaagcttcctttttgttgattccttagctctcttttgttctttcagaacct 16316368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 44467338 - 44467457
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| || ||||||||||||||||||  || |||| | |||||||| |||||||| |||| |||||||||          
T  44467338 cttcaggagcacttctcttcagatgcttcaaacttcctttttgttgattccattgctctattttgttcttccagaacctatttatgatgtcaaatttttg 44467437  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  44467438 tctatggtcctgtacacttg 44467457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13692627 - 13692707
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||  |||||| ||| |||||| |||||||| ||||||||    
T  13692627 gtcttcaggagcacttctcttcagacgccttaagcttcctttttcctgattcctttgctctcttttgttcttccagaacct 13692707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 15469781 - 15469848
Alignment:
Q  29 tttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  15469781 tttaagcttcgtatttgttgattcctttgctctctattgttcttccataacctttttaagatgtcaaa 15469848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30945261 - 30945190
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||||| |||||| |||| | ||||||||    
T  30945261 gtcttcaggagcagttttcttcagacgttttaagcttcctttttgttgactcatttgctcttttttgttctt 30945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 4494761 - 4494880
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| || ||| |||| ||||||||||||||||||||   || |||||| | |||||| |||||||| ||||||||||||||          
T  4494761 cttcaggagcacttctctttagatgcttcaagcttcctttttgttgatttcattgctctctttcgttcttccagaacctatttaagatgtcaaatttttg 4494860  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||| ||||||||    
T  4494861 tctatggtcctatacacttg 4494880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13137794 - 13137716
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  13137794 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttacctctcttttgttcttccagaacct 13137716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 22577862 - 22577771
Alignment:
Q  32 aagcttcctttttgttgattcattttctct-ctattgttctttcagaacctttttaagatgtcaaannnnnnnctatggtcctgtacacttg 122  Q
    ||||||||||||||||||||||||| |||| || |||||||| |||||||| ||||||||||||||       |||||||| ||||||||||    
T  22577862 aagcttcctttttgttgattcatttgctctccttttgttcttccagaacctatttaagatgtcaaatttttttctatggtcatgtacacttg 22577771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48800511 - 48800433
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| |||||||| ||||||||    
T  48800511 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacct 48800433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 2265404 - 2265308
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||  |||  |||| || |||||||| ||  |||||||||||||||||||    
T  2265404 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtattagctctttatttgttcttccaagacctttttaagatgtcaaa 2265308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 9069868 - 9069980
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||||||||||| || |||||||||||||||       |||||||   || ||||||||||||| | |||||||||||||||||||||||          
T  9069868 cttcaggagcagttctctttagacgctttaagctt-------gttgatttcattgctctctattgttcatccagaacctttttaagatgtcaaatttttg 9069960  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  9069961 tctatggtcctgtacacttg 9069980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13303109 - 13303187
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||||||||||| |||| ||||||||||||  ||| |||||| |||||||| || |||||    
T  13303109 cttcaggagcacttctcttcagacgctttaaacttcttttttgttgatttctttgctctcttttgttcttccataacct 13303187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13730579 - 13730502
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||| ||||| ||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  13730579 cttcaggagcacttctcttc-gacgccttaagtttcctttttgttgattcctttgctctcttttgttcttccagaacct 13730502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 12366619 - 12366501
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnn 103  Q
    |||||||||| |||| || ||| |||| |||||||||||||||||||||  || |||||| || ||||| ||||||||  | ||||| |||||           
T  12366619 ttcaggagcacttctctttagatgcttcaagcttcctttttgttgattccattgctctctttttttcttccagaacctaataaagatatcaaatttttgt 12366520  T
Q  104 ctatggtcctgtacacttg 122  Q
    |||||||||||||||||||    
T  12366519 ctatggtcctgtacacttg 12366501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 24788381 - 24788450
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||||||| |||| |||||| |||| |||||||| |||||||||||||||| |||||| ||| ||||    
T  24788381 cttcaggagcacttctcttcagatgcttcaagcttccattttgttgattcatttgctctcttttggtctt 24788450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 7339736 - 7339660
Alignment:
Q  20 ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| |||||||| || |||||||| |||| |||||||||| ||  || ||||||||||| ||||    
T  7339736 ttcagacgctttaagcatcctttttttttattcatttgctctttattgttcttccaagacatttttaagatgacaaa 7339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 16556619 - 16556576
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgt 46  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  16556619 cttcaggagcagttttcttcagacgctttaagcttcctttttgt 16556576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 16609043 - 16609086
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgt 46  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  16609043 cttcaggagcagttttcttcagacgctttaagcttcctttttgt 16609086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 21695658 - 21695736
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| ||||| |||| |||| ||| || ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  21695658 cttcaagagcacttctcttcaaacgattcaagcttcctttttgttgattccttaactctcttttgttcttccagaacct 21695736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 29935228 - 29935170
Alignment:
Q  23 agacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| |||||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  29935228 agacgatttaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 29935170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 8183234 - 8183282
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  8183234 cttcaggagcagttttattcagacgctttaagcttccctttttgttgat 8183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 27871983 - 27872031
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  27871983 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 27872031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 331938 - 332057
Alignment:
Q  3 cttcaggagcagttctt-ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    |||||||||||||||   |||||| ||||||||||||| |||||||| ||| ||  |||||| |||||||| |||||||  | ||||||||||||         
T  331938 cttcaggagcagttcgacttcagatgctttaagcttcc-ttttgttgtttccttagctctcttttgttcttccagaaccaatataagatgtcaaattttt 332036  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||||||| ||||||||||    
T  332037 gtctatggtcttgtacacttg 332057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 1293258 - 1293301
Alignment:
Q  7 aggagcagttcttttcagacgctttaagctt-cctttttgttga 49  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  1293258 aggagcagtttttttcagacgctttaagcttccctttttgttga 1293301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 5826254 - 5826349
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||| | ||||||||||| |||||||||||||  |||| |||| || |||||||| ||  ||| |||||||||||||||    
T  5826254 cttcaggagcagttttcttcatatgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagaccattttaagatgtcaaa 5826349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19710855 - 19710800
Alignment:
Q  18 ttttcagacgctttaagcttc-ctttttgttgattcattttctctctattgttctt 72  Q
    |||||||| |||||| ||||| |||||||||||||||||| |||||| ||||||||    
T  19710855 ttttcagatgctttaggcttctctttttgttgattcatttgctctcttttgttctt 19710800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 32264594 - 32264546
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||| ||| |||||||||||||    
T  32264594 cttcaggagcagttttcttcagacgctttaaacttccctttttgttgat 32264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22317898 - 22318017
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||          
T  22317898 cttcaggagcagttctcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttctagaacctttttaagatgtcaaatttttg 22317997  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  22317998 tctatggtcctgtacacttg 22318017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20151866 - 20151771
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| |||  ||| ||||||||||||||| ||  |||||||||||||||||||    
T  20151866 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttaattactttgctctctattgttcttccaagacctttttaagatgtcaaa 20151771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 23235293 - 23235412
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||| ||||| |||| |||||||||||||||||| ||||||||||||||| || |||||| ||||||||  ||||||| ||||||||||||||          
T  23235293 cttcaagagcacttctcttcagacgctttaagcttactttttgttgattcaattgctctcttttgttcttctagaacctatttaagatgtcaaatttttg 23235392  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  23235393 tctatggtcctgtacacttg 23235412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 38781666 - 38781785
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||  |||| |||||| |||| |||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||| ||||          
T  38781666 cttcaggagcgcttctcttcagatgcttcaagcttcctttttgttgattcaattgctctcttttgttcttccagaacctttttaagatgacaaatttttg 38781765  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  38781766 tctatggtcctgtacacttg 38781785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25829388 - 25829468
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  25829388 gtcttcaggagcacttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 25829468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 28701027 - 28700932
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  28701027 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 28700932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28711529 - 28711433
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttccttttt-gttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||| |||||||||||||||||||| |||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  28711529 gtcttcaggagcagttttcttcaaacgctttaagcttccttttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 28711433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 13963824 - 13963705
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| ||||||||||| | || || | |||||||||||||||| ||| |||||| |||||||| |||||||| ||||||||||||||          
T  13963824 cttcaggagcacttcttttcagatgtttcaaacgtcctttttgttgattcctttgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 13963725  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||| ||||||||||    
T  13963724 tctatggtcatgtacacttg 13963705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 1586855 - 1586760
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  1586855 cttcaggagcagtttttttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 1586760  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 30667275 - 30667353
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||| |||||| |||| |||||| |||| |||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  30667275 cttcgggagcacttctcttcagatgcttcaagcttcctttttgttgattcaattgctctctattgttcttccagaacct 30667353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 9015185 - 9015092
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| ||||| |||| |||||| |||| |||||||| |||||||||||| ||| |||||| |||||||| |||||||| |||||||| |||||    
T  9015185 cttcaagagcacttctcttcagatgcttcaagcttccattttgttgattcctttgctctcttttgttcttccagaacctatttaagatttcaaa 9015092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22260689 - 22260769
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  22260689 gtcttcaggagcacttctcttcagacgccttaaacttcctttttgttgattcctttgctctcttttgttcttctagaacct 22260769  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 31800701 - 31800606
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||  ||| |||||||||| ||  || ||||||| ||||||||    
T  31800701 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgttctttattgttcttccaagacatttttaatatgtcaaa 31800606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 30557103 - 30557053
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  30557103 tcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattc 30557053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 45086945 - 45086855
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| | |||||||||||||||||||| |||||||||| |  ||| |||| |||||||||| || |||||||||||||| |||||    
T  45086945 aggagcagttttcttcagacgctttaagcttccctttttgttgacttctttgctctttattgttcttccaaaacctttttaagatatcaaa 45086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 31327770 - 31327677
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||||||||||| | ||||| ||| ||||||||| |||||||||||| | ||| |||| |||||||||| ||| ||||||||||||| ||||    
T  31327770 cttcaggagcagttttcttcaggcgcgttaagcttctctttttgttgatgcctttgctctttattgttcttccaggacctttttaagatatcaa 31327677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 31334491 - 31334398
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||||||||||| | ||||| ||| ||||||||| |||||||||||| | ||| |||| |||||||||| ||| ||||||||||||| ||||    
T  31334491 cttcaggagcagttttcttcaggcgcgttaagcttctctttttgttgatgcctttgctctttattgttcttccaggacctttttaagatatcaa 31334398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20568565 - 20568485
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| || | ||||||||  ||||||||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  20568565 gtcttcaggagcacttatcttcagacgtcttaagcttcctttttgttgattcctttactctcttttgttcttcaagaacct 20568485  T

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Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 30621479 - 30621592
Alignment:
Q  9 gagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatg 108  Q
    ||||| |||| || ||| |||| |||||||||||||||||||||  || ||||||||||||||| ||||||||  | ||||| |||||       |||||    
T  30621479 gagcacttctctttagatgcttgaagcttcctttttgttgattccattgctctctattgttcttccagaacctaataaagatatcaaatttatgtctatg 30621578  T
Q  109 gtcctgtacacttg 122  Q
    ||||||||||||||    
T  30621579 gtcctgtacacttg 30621592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 30624100 - 30624213
Alignment:
Q  9 gagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatg 108  Q
    ||||| |||| || ||| |||| |||||||||||||||||||||  || ||||||||||||||| ||||||||  | ||||| |||||       |||||    
T  30624100 gagcacttctctttagatgcttgaagcttcctttttgttgattccattgctctctattgttcttccagaacctaataaagatatcaaatttatgtctatg 30624199  T
Q  109 gtcctgtacacttg 122  Q
    ||||||||||||||    
T  30624200 gtcctgtacacttg 30624213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 34321720 - 34321624
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||| ||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  34321720 tcttcaggagcagttttcttcagacgctttaaacttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 34321624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 6392921 - 6392980
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctct 61  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||| ||||    
T  6392921 tcttcaggagcagttttcttcagacgctttaagcttcctttgtgttgattcctttgctct 6392980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 25037082 - 25036966
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||| ||||| |||| |||||| |||||||||||| ||||||||||||| ||| |||||| || ||||| ||||||||  | ||||| |||||          
T  25037082 cttcatgagcacttctcttcagatgctttaagcttcgtttttgttgattcctttgctctctttttttcttccagaacctaataaagatatcaaatttctg 25036983  T
Q  103 nctatggtcctgtacac 119  Q
     ||||||||||||||||    
T  25036982 tctatggtcctgtacac 25036966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 25041189 - 25041073
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||| ||||| |||| |||||| |||||||||||| ||||||||||||| ||| |||||| || ||||| ||||||||  | ||||| |||||          
T  25041189 cttcatgagcacttctcttcagatgctttaagcttcgtttttgttgattcctttgctctctttttttcttccagaacctaataaagatatcaaatttctg 25041090  T
Q  103 nctatggtcctgtacac 119  Q
     ||||||||||||||||    
T  25041089 tctatggtcctgtacac 25041073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 18376751 - 18376673
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| || | |||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  18376751 cttcaggagcatttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 18376673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6573954 - 6573861
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtca 94  Q
    |||||||| |||| || | |||||| | ||||||||||||||||||| |||| ||| ||| ||||||||||| ||  | |||||||||||||||    
T  6573954 gtcttcagaagcatttttcttcagatgttttaagcttcctttttgttaattcctttgctccctattgttcttccaagatctttttaagatgtca 6573861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38631238 - 38631318
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| |||||| |||| ||||||| ||||||||||||  ||| |||||| ||||| || ||||||||    
T  38631238 gtcttcaggagcacttctcttcagatgcttcaagcttcatttttgttgatttctttgctctcttttgtttttccagaacct 38631318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 22802759 - 22802854
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||| ||||| || | |||||||||||||||||| ||||||||||||||   || |||| |||||||||| ||  ||||||||||||| |||||    
T  22802759 tcttcatgagcaattttcttcagacgctttaagcttccctttttgttgatttcattactctttattgttcttccaagacctttttaagatatcaaa 22802854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19540684 - 19540762
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||| || || | |||||||||||||||||| |||||||||||||| ||  |||||| |||||||| || |||||    
T  19540684 cttcaggaacacttttcttcagacgctttaagctttctttttgttgattccttagctctcttttgttcttccaaaacct 19540762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 22187933 - 22187855
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| |||||||||||||| |||||| ||| |||| | |||||||| || |||||    
T  22187933 cttcaggagcacttctcttcagatgcttcaagcttcctttttgctgattcctttgctctattttgttcttccataacct 22187855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 24850480 - 24850402
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| || | |||||| |||| ||||||||||||||||||||| ||  |||||| ||||||||  |||||||    
T  24850480 cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttcgagaacct 24850402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 10009582 - 10009533
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  10009582 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattc 10009533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 24377356 - 24377425
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||||||| |||| |||||| ||||  ||||||||||||||||||||  || |||||| ||||||||    
T  24377356 cttcaggagcacttctcttcagatgcttctagcttcctttttgttgattctattgctctcttttgttctt 24377425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 28140449 - 28140400
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| |||| |||||||| | ||||||||||||||||||||||    
T  28140449 cttcaggagcacttctcttcagacgttctaagcttcctttttgttgattc 28140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 22776127 - 22776079
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  22776127 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 22776079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 22781505 - 22781457
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  22781505 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 22781457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 31967865 - 31967744
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||| ||||||| | |||| ||||||||||||| |||||||||||||  |||| |||| || |||||||||||  |||  ||||||||||||||        
T  31967865 cttcagaagcagttttcttcaaacgctttaagcttccctttttgttgatgtatttgctctttatttgttctttcaagaccaatttaagatgtcaaatttt 31967766  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  31967765 tgtctatagtcctgtacacttg 31967744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 40782757 - 40782805
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    |||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  40782757 ttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattc 40782805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 44840709 - 44840757
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  44840709 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 44840757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 3277274 - 3277365
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgt 92  Q
    |||||||||||||| | |||| | ||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||    
T  3277274 cttcaggagcagttttcttcataagctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgt 3277365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 23184161 - 23184112
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| || | |||||| |||| |||||||||||||||||||||    
T  23184161 cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgattc 23184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 23595418 - 23595369
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| || | |||||| |||| |||||||||||||||||||||    
T  23595418 cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgattc 23595369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 39037471 - 39037422
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    |||||| |||| |||| |||||| |||| |||||||||||||||||||||    
T  39037471 cttcagtagcacttctcttcagatgcttcaagcttcctttttgttgattc 39037422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 22454805 - 22454757
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgatt 51  Q
    ||||||||||| || | |||||| |||| ||||||||||||||||||||    
T  22454805 cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgatt 22454757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 40332366 - 40332414
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    ||||| |||||||| | |||||||||||||||||| |||||||||||||    
T  40332366 cttcaagagcagttttcttcagacgctttaagcttccctttttgttgat 40332414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 21933185 - 21933278
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  21933185 cttcaggagcagttctcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccagaacctttttaagatgtcaaa 21933278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 18120993 - 18120872
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| || | ||| |||||        
T  18120993 gtcttcaggagcagttctcttcaaacgctttaagcttcctttttgttgattcatttgctctcttttgttcttccagaacctattgatgatctcaaatttt 18120894  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  18120893 tgtctatggtcctgtacacttg 18120872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 30421311 - 30421216
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  30421311 gtcttcaggagcagttttgttcagacgctttaagcttcctttttgttaattcctttgctctctattgttcttccaagacctttttaagatgtcaaa 30421216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 16189283 - 16189376
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||    
T  16189283 cttcaagagcacttctcttcagacgcttcaagcttcctttttgttgattcatttgctctcttttgttcttccagaacctatttaagatgtcaaa 16189376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 17441690 - 17441597
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |||||||| ||||||||||||||    
T  17441690 cttcaggagcacttctcttcagacgctttaagcttccttttcgttgattcctttgctctcttttgttcttccagaacctatttaagatgtcaaa 17441597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 20382263 - 20382144
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||||  || |||||| |||||||||||||||||  | |||||||||||          
T  20382263 cttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccattactctcttttgttctttcagaacctaataaagatgtcaaatttttg 20382164  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  20382163 tctatggtcctgtacacttg 20382144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22745754 - 22745873
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||| ||||| |||| ||||||| ||||||||||||||||||||||||| ||| |||| | |||||||| |||||||| ||||||||||||||          
T  22745754 cttcatgagcacttctcttcagacactttaagcttcctttttgttgattcctttgctcttttttgttcttccagaacctatttaagatgtcaaatttttg 22745853  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||| ||||||||||||||    
T  22745854 tctatcgtcctgtacacttg 22745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23185092 - 23185016
Alignment:
Q  20 ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||| || || |||||||||||||||||    
T  23185092 ttcagacgctttaagcttcctttttgttagttcatttgctctctattgttcttccaaaatctttttaagatgtcaaa 23185016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 16207556 - 16207631
Alignment:
Q  20 ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||| |||| ||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  16207556 ttcagatgcttcaagattcctttttgttgattcatttgctctcttttgttcttccagaacctttttaagatgtcaa 16207631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 20255435 - 20255357
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||| ||||| || ||||||||    
T  20255435 cttcaggagcagttctcttcagacgctttaaacttcctttttgttgattcctttgctctcttttgttgttccagaacct 20255357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 1237951 - 1238046
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||| |||||||| | |||||| ||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  1237951 tcttcatgagcagttttcttcagatgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 1238046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 24832923 - 24832828
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||  ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  24832923 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatttctttgctctttattgttcttccaagacctttttaagatatcaaa 24832828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 45538323 - 45538228
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||  ||| |||| |||||||||| ||  ||||||||||| |||||||    
T  45538323 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatttctttgctctttattgttcttccaagacctttttaagttgtcaaa 45538228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 9320869 - 9320963
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||||||| |||| | |||||||||||||| ||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  9320869 tcttcaggagtagttttcttcagacgctttaatcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaa 9320963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 15335909 - 15335815
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  15335909 cttcaggagcagttttcttcagacactttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatatcaaa 15335815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 15424974 - 15424880
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  15424974 cttcaggagcagttttcttcagacactttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatatcaaa 15424880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 15516278 - 15516184
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||| |||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  15516278 cttcaggagcagttttcttcagacactttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatatcaaa 15516184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19156466 - 19156544
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||  |||||||    
T  19156466 cttcaggagcacttctcttcagacgctttaagcttcctttttgttgatccctttgctctcttttgttcttctagaacct 19156544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16681173 - 16681095
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| || ||  |||||||| ||||||||    
T  16681173 gtcttcaggagcacttctcttcagacgctttaagcttcatttttgttgattcatttgctatc--ttgttcttccagaacct 16681095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 40845240 - 40845118
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannn 99  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||       
T  40845240 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaattt 40845141  T
Q  100 nnnnctatggtcctgtacacttg 122  Q
        |||| ||||||||||||||    
T  40845140 ttgtctatagtcctgtacacttg 40845118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 6408001 - 6408122
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||| | |||| ||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||        
T  6408001 cttcaggagcagttttcttcaaacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaatttt 6408100  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  6408101 tgtctatagtcctgtacacttg 6408122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 14989325 - 14989205
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||| | |||||||||||||||||||| |||||||||||  |||| |||| || ||||||||||| |  |||||||||||||||||        
T  14989325 cttcaggagcagttttcttcagacgctttaagcttccatttttgttgatgtatttgctctttacttgttctttca-agactttttaagatgtcaaatttt 14989227  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  14989226 tgtctatagtcctgtacacttg 14989205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17525599 - 17525523
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcaga 77  Q
    ||||||||||||| ||||||||||| |||| || |||| ||||||||||||  ||| |||||| |||||||||||||    
T  17525599 gtcttcaggagcacttcttttcagatgcttcaatcttcatttttgttgatttctttgctctcttttgttctttcaga 17525523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 36105509 - 36105605
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | ||||||| |||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  36105509 tcttcaggagcagttttcttcagacactttaagcttccctttttgttgatgtatttgctctttatttgttcttccaatacctttttaagatgtcaaa 36105605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29693599 - 29693670
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||| ||||| |||| |||||| |||||||||||||||||||||||||| | | |||||| ||||||||    
T  29693599 gtcttcaagagcacttctcttcagatgctttaagcttcctttttgttgattcctctgctctcttttgttctt 29693670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 17267767 - 17267833
Alignment:
Q  15 ttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  17267767 ttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 17267833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 39693819 - 39693897
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| |||| ||| || |||||||||||| ||||||||||||||||| |||||| | |||||| ||||||||    
T  39693819 cttcagaagcacttctcttcggatgctttaagcttcttttttgttgattcatttgctctctttcgttcttccagaacct 39693897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 19943520 - 19943613
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttg-ttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    ||||||||||| |||| |||||| |||| ||||||| |||||| |||||||  || |||||| ||||||||  ||||||| |||||||||||||    
T  19943520 cttcaggagcacttctcttcagatgcttcaagcttcttttttggttgattccattactctcttttgttcttctagaacctatttaagatgtcaa 19943613  T

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Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 17797703 - 17797800
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc---tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| |||||||| |||||||||||||   ||||||||||||| ||| || | |||| ||||| ||  | |||||||||||||||||    
T  17797703 gtcttcaggagcagtt-ttttcagatgctttaagcttccttttttttgttgattcctttgctatttattattcttccaagatctttttaagatgtcaaa 17797800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18151530 - 18151410
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||| | |||||||||||||||||||| |||||||||||  |||| |||| || ||||||||||| |  ||||||||| |||||||        
T  18151530 cttcaggagcagttttcttcagacgctttaagcttccatttttgttgatgtatttgctctttacttgttctttca-agactttttaagttgtcaaatttt 18151432  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  18151431 tgtctatagtcctgtacacttg 18151410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 19927335 - 19927423
Alignment:
Q  9 gagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| | || ||||||||||||||||| ||||||||| ||| ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  19927335 gagcagttttctttagacgctttaagcttccctttttgttggttcctttgctctttattgttcttccaagacctttttaagatatcaaa 19927423  T

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Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 13430501 - 13430406
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  13430501 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 13430406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 602582 - 602483
Alignment:
Q  23 agacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatggtcctgtacacttg 122  Q
    |||||||| || |||||||||||||||||| ||  |||||| |||||||| ||||||||  | ||||| |||||       |||||||||||||||||||    
T  602582 agacgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaacctaataaagatatcaaatttttgtctatggtcctgtacacttg 602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 17914747 - 17914821
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| |||| |||||| |||| ||||||||||| ||||||||| ||| |||||| || ||||| ||||||||    
T  17914747 aggagcacttctcttcagatgcttcaagcttcctttctgttgattcctttgctctcttttattcttccagaacct 17914821  T

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Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 24646621 - 24646740
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |  ||| |||| |||||||||||||||||||||  ||  | ||| |||||||| || ||||| ||||||||||||||          
T  24646621 cttcaggagcacttctctctagatgcttcaagcttcctttttgttgattccattggtatcttttgttcttccaaaacctatttaagatgtcaaatttttt 24646720  T
Q  103 nctatggtcctgtacacttg 122  Q
     ||||||||||||| |||||    
T  24646721 tctatggtcctgtatacttg 24646740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 33083140 - 33083189
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||| ||||| |||| ||||||||||||||||||| |||||||||||||    
T  33083140 cttcaagagcacttctcttcagacgctttaagcttcttttttgttgattc 33083189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 3598198 - 3598102
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttc-agaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | ||||||||||||||| || ||| ||||||||||| |||  ||| |||||||||| | ||| | ||||||| ||||||||    
T  3598198 tcttcaggagcagttttcttcagacgctttaagtttccctctttgttgattcctttgttctgtattgttcttccaagatcttttttaaaatgtcaaa 3598102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 17702010 - 17702088
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| |||| |||||| |||| |||||||||||||||||||||  |  |||||| ||||| || ||||||||    
T  17702010 cttcagaagcacttctcttcagatgcttcaagcttcctttttgttgattccataactctcttttgttattccagaacct 17702088  T

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Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 18321058 - 18320939
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| ||||||| |||||||||||||  |  || ||| |||||||| |||||| |  | ||||| |||||          
T  18321058 cttcaggagcacttctcttcagatgcttcaagcttcttttttgttgattccatagctatcttttgttcttccagaacgtaataaagatatcaaatttttg 18320959  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  18320958 tctatggtcctgtacacttg 18320939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 24551588 - 24551636
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgat 50  Q
    |||||||||||||||   |||| |||||||||| |||||||||||||||    
T  24551588 tcttcaggagcagtttgcttcaaacgctttaagtttcctttttgttgat 24551636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 45292894 - 45292942
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    ||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  45292894 cttcaggtgcagttttcttcagacgctttaagcttccctttttgttgat 45292942  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 32544558 - 32544653
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  32544558 gtcttcaggagcagttctcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccataacctttttaagatgtcaaa 32544653  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18435864 - 18435985
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||  || ||||||||||| ||||        
T  18435864 gtcttcaggagcagttctcttcagatgctttaagcttcctttttgttgattccttttctctctattgttcttccaatacatttttaagatgacaaatttt 18435963  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  18435964 tgtctatggtcctgtacacttg 18435985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 26972067 - 26971948
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||          
T  26972067 cttcagaagcagttctcttcagacgctttaagattcctttttgttgattcctttgctctccattgttcttccagaacctttttaagatgtcaaatttttg 26971968  T
Q  103 nctatggtcctgtacacttg 122  Q
      ||||||||||||||||||    
T  26971967 tttatggtcctgtacacttg 26971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 21235387 - 21235482
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  21235387 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgtagattcctttgctctctattgttcttccaagacctttttaagatgtcaaa 21235482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 22802415 - 22802510
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  22802415 gtcttcaggagcagtttatttcagacgttttaagcttcctttttgttgattcctttcctctctattgttcttccaagacctttttaagatgtcaaa 22802510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 19689008 - 19689126
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||||||  ||| ||||||||||| || |||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||          
T  19689008 cttcaggagcacatctcttcagacgcttcaaacttcctttttgttgattcatttgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 19689107  T
Q  103 nctatggtcctgtacactt 121  Q
     ||||||||||||||||||    
T  19689108 tctatggtcctgtacactt 19689126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16265025 - 16264930
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||||| |||||| | ||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    
T  16265025 gtcttcaggagcagttttcttcagatgctttaggattcctttttgttgattcctttgctctctattgttctttcaagacctttttaagatgtcaaa 16264930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15954977 - 15955073
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  15954977 gtcttaaggagcagtttttttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 15955073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21625388 - 21625509
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||| |||  |||| |||||| |||| ||||||||| |||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||        
T  21625388 gtcttcagaagcgcttctcttcagatgcttcaagcttcctatttgttgattcattttctctcttttgttcttcgagaacctttctaagatgtcaaatttt 21625487  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  21625488 tgtctatggtcctgtacacttg 21625509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20730579 - 20730484
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||| |||||||| | ||||||||||| ||||||||||||||||||||  ||| ||||||||||||||| ||  |||||||||||||||||||    
T  20730579 gtcttcatgagcagttttcttcagacgcttaaagcttcctttttgttgatttctttgctctctattgttcttccaagacctttttaagatgtcaaa 20730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34451543 - 34451448
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||  |||| |||||| |||| |||||||||||||| |||||| ||| |||||| |||||||| |||||||||||||||||||||||    
T  34451543 gtcttcaggagcgcttctcttcagatgcttcaagcttcctttttgctgattcctttgctctcttttgttcttccagaacctttttaagatgtcaaa 34451448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 13435828 - 13435939
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnncta 106  Q
    ||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| ||||||||||||||||| ||||||||||||||       |||    
T  13435828 aggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttctttcagaacctatttaagatgtcaaatttttgtcta 13435927  T
Q  107 tggtcctgtaca 118  Q
    ||||||||||||    
T  13435928 tggtcctgtaca 13435939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 20487759 - 20487666
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||| || | |||||||||| ||  ||||||||||||||||||    
T  20487759 tcttcaggagcagttttcttcagacgctttaagcttcttttttgttgattcctttgctttttattgttcttccaagacctttttaagatgtcaa 20487666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9718133 - 9718213
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  9718133 gtcttcaggagtagttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttctagaacct 9718213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 15531482 - 15531361
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||| |||||||  |||| |||||| ||||||||||| |||||||||||||||||| |||| | ||||| || |||||| ||||||||||||||||        
T  15531482 gtctacaggagcgcttctcttcagatgctttaagctttctttttgttgattcatttgctcttttttgttattccagaacttttttaagatgtcaaatttt 15531383  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  15531382 tatctatggtcctgtacacttg 15531361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 19832859 - 19832764
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  19832859 tcttcaggagcagttttcttcagacgctttaagcttcctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 19832764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13602447 - 13602525
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||| ||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  13602447 cttcaggagcacttctcttcaaacggtttaagcttcctttttgttgattccttttctctcttttgttcttccagaacct 13602525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 139225 - 139136
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatg 91  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| ||| |||| ||||||||||  |  ||||||||||||||    
T  139225 tcttcaggagcagttttcttcagacgctttaagctttctttttgttgattcctttgctctttattgttcttctaagacctttttaagatg 139136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 147246 - 147157
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatg 91  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| ||| |||| ||||||||||  |  ||||||||||||||    
T  147246 tcttcaggagcagttttcttcagacgctttaagctttctttttgttgattcctttgctctttattgttcttctaagacctttttaagatg 147157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 17381721 - 17381812
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgt 92  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||| | | |||| |||||||||| ||  |||||||||||||||    
T  17381721 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctatgctctttattgttcttccaagacctttttaagatgt 17381812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 16877506 - 16877600
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||| ||| |||||||| |||| ||| |||| |||||||||| ||| ||||||||||||| |||||    
T  16877506 cttcaggagcagttttcttcagacgctttaagcctccctttttgttaattcctttgctctttattgttcttccaggacctttttaagatatcaaa 16877600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19086442 - 19086520
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  19086442 cttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 19086520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29918291 - 29918388
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctt--tttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| ||||||| | |||| |||||||||||||||||  ||||||||||| ||| ||||||||| ||||| ||  |||||||||||||||||||    
T  29918291 gtcttcagaagcagttttcttcatacgctttaagcttccttgatttgttgattcctttgctctctattattcttccaagacctttttaagatgtcaaa 29918388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 21618526 - 21618648
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannn 99  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||       
T  21618526 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaactt 21618625  T
Q  100 nnnnctatggtcctgtacacttg 122  Q
        |||| ||||||||||||||    
T  21618626 ttgtctatagtcctgtacacttg 21618648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 12349254 - 12349349
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  12349254 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 12349349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 12423514 - 12423609
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  12423514 cttcaggagcagttttcttcagacgctttaagcttcactttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 12423609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 22058439 - 22058344
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  22058439 cttcaggagcaattctcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 22058344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19624254 - 19624332
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  19624254 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 19624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 24117120 - 24117198
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||| ||  |||||| |||||||| || |||||    
T  24117120 cttcaggagcacttctcttcagatgctttaagcttcctttttgttgattccttagctctcttttgttcttccataacct 24117198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 18378545 - 18378614
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||||||| |||| || ||||| |||||||||||||||||||||||| ||| |||||| ||||||||    
T  18378545 cttcaggagcacttctcttaagacgttttaagcttcctttttgttgattcctttactctcttttgttctt 18378614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12715294 - 12715223
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||||||||| |||| |||||| |||| ||||||||||||||||||||  ||| |||||| ||||||||    
T  12715294 gtcttcaggagcacttctcttcagatgcttcaagcttcctttttgttgatttctttgctctcttttgttctt 12715223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33351804 - 33351681
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaann 98  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||||  | || ||||||| |||||||| ||  |||  ||||||||||||||      
T  33351804 gtcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtacttgctctctatttgttcttccaagaccactttaagatgtcaaatt 33351705  T
Q  99 nnnnnctatggtcctgtacacttg 122  Q
         |||| ||||||||||||||    
T  33351704 tttatctatagtcctgtacacttg 33351681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 14100330 - 14100237
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||| | |||| | |||| |||| |||||||||||||||||||||  || |||||| |||||||| |||||||| ||||| || |||||    
T  14100330 cttcaggagtacttctctccagatgcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacctatttaatatatcaaa 14100237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15302461 - 15302541
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||| ||||| |||| |||||||||||| ||| |||||| || |||||  |||||||    
T  15302461 gtcttcaggagcacttctcttcagacgccttaagtttccattttgttgattcctttgctctctttttttcttctagaacct 15302541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 15987488 - 15987564
Alignment:
Q  5 tcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||| || | |||||| |||| ||||||||||||||||||||| ||  |||||| ||||| |||||||||||    
T  15987488 tcaggagcacttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttttttcagaacct 15987564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 16336445 - 16336540
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||||  |||| |||| || |||||||| ||  ||| |||||||||||||||    
T  16336445 tcttcaggagcagttttcttcagacgctttaagcttcactttttgttgatgtatttgctctttatttgttcttccaagacc-ttttaagatgtcaaa 16336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 25597754 - 25597832
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| ||||| ||||||||||||||||||||  || |||||| || |||||  |||||||    
T  25597754 cttcaggagcacttctcttcagatgcttttagcttcctttttgttgattccattgctctcttttattcttctagaacct 25597832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 19065882 - 19065805
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaa 78  Q
    |||||||||||||| | ||||||||||| ||||||| ||||||||||||  | ||||||| || ||||||||||||||    
T  19065882 cttcaggagcagttttcttcagacgcttgaagcttctctttttgttgatatactttctctttatttgttctttcagaa 19065805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 20112567 - 20112452
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnncta 106  Q
    ||||||| |||| || ||| |||| |||||||||||||||||||||  |  | |||| |||||||| ||||||||  | ||||| |||||       |||    
T  20112567 aggagcacttctctttagatgcttcaagcttcctttttgttgattccatagccctctcttgttcttccagaacctaataaagatatcaaatttttgtcta 20112468  T
Q  107 tggtcctgtacacttg 122  Q
    ||||||||||||||||    
T  20112467 tggtcctgtacacttg 20112452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 17608160 - 17608107
Alignment:
Q  20 ttcagacgctttaagcttc-ctttttgttgattcattttctctctattgttctt 72  Q
    |||||| |||||| ||||| |||||||||||||||||| |||||| ||||||||    
T  17608160 ttcagatgctttaggcttctctttttgttgattcatttgctctcttttgttctt 17608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 18383955 - 18384008
Alignment:
Q  28 ctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| ||||||||||||| ||| |||||| |||||||| ||||||||    
T  18383955 ctttaaacttcttttttgttgattcctttgctctcttttgttcttccagaacct 18384008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 23284855 - 23284904
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| |||| |||||| | || |||||||||||||||||||||    
T  23284855 cttcaggagcacttctcttcagatgtttcaagcttcctttttgttgattc 23284904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 18121491 - 18121396
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18121491 gtcttcaggagcagttctcttcagacgctttaagcttcatttttgttgcttcatttgctctctattgttcttccagaacctttttaagatgtcaaa 18121396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 47207999 - 47208094
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  47207999 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctctctattgttcttccaatacctttttaagatgtcaaa 47208094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28582396 - 28582517
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||| |||||        
T  28582396 gtcttcaggagcagttctcttcagacgttttaagcttcctttttgttgatttctttactctctattgttcttccagaacctttttaagatttcaaatttt 28582495  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||| ||||||||||    
T  28582496 tgtctatggtcatgtacacttg 28582517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2561463 - 2561564
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgatt------cattttctctctattgttctttcagaacctttttaagatgtca 94  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||| ||||||||||||||| |||||||||||||||||||||    
T  2561463 gtcttcaggagcagttctcttcagacgctttaagcttcctttttgttgattcatttgcatttgctctctattgttcttccagaacctttttaagatgtca 2561562  T
Q  95 aa 96  Q
    ||    
T  2561563 aa 2561564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 50300508 - 50300602
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| |||| | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| || ||||||||||||||||||||    
T  50300508 tcttcaggagtagttttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaaaacctttttaagatgtcaaa 50300602  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11869375 - 11869470
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | || |||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  11869375 gtcttcaggagcagttttctttagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 11869470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 47405321 - 47405230
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgt 92  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||  || ||||||||||||    
T  47405321 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccaagacgtttttaagatgt 47405230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 31303680 - 31303799
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||| ||||| || ||||||||||||||          
T  31303680 cttcaggagcacttctcttcagatgctttaagcttcctttttgttgattcttttgctctcttttgttcttccagaaactatttaagatgtcaaatttttg 31303779  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||| ||||||||||    
T  31303780 tctatggtcatgtacacttg 31303799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 52920696 - 52920815
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||  |||||| |||||||| |||||||||||||||||||||||          
T  52920696 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacctttttaagatgtcaaatttttg 52920795  T
Q  103 nctatggtcctgtacacttg 122  Q
     ||||| |||||||||||||    
T  52920796 tctatgatcctgtacacttg 52920815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 20627347 - 20627258
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgt 92  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||  |||||||||||||||    
T  20627347 cttcagaagcagttttgttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccaagacctttttaagatgt 20627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11223836 - 11223931
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||| |||| |||| ||||| ||  |||||||||||||||||||    
T  11223836 gtcttcaggagcagttctcttcagatgctttaaacttcctttttgttgattcctttgctctttattattcttccaagacctttttaagatgtcaaa 11223931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 40800117 - 40800210
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||  ||| ||||||||| ||||| ||  |||||||||||||||||||    
T  40800117 cttcaggagcacttttcttcagacgctttaagcttcctttttgttgatttctttgctctctattattcttccaagacctttttaagatgtcaaa 40800210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 6091023 - 6091142
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| ||||||| ||||||||||||   || |||||| |||||||| |||||||| ||||||||||||||          
T  6091023 cttcaggagcacttctcttcagatgcttcaagcttcatttttgttgatttcattgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 6091122  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  6091123 tctatggtcctgtacacttg 6091142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 49553359 - 49553237
Alignment:
Q  2 tcttcaggagcagttctt-ttcagacgctttaagcttcctttttgttgattcattttctct-ctattgttctttcagaacctttttaagatgtcaaannn 99  Q
    |||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||| || |||||||| |||||| | ||||||||||||||       
T  49553359 tcttcaggagcacttctacttcagacgcttcaagcttcctttttgttgattcatttgctctcctgttgttcttccagaacttatttaagatgtcaaattt 49553260  T
Q  100 nnnnctatggtcctgtacacttg 122  Q
        |||||||| ||||||||||    
T  49553259 ttgtctatggtcatgtacacttg 49553237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 25631909 - 25631993
Alignment:
Q  123 ttcattattttgcttttgatctctgcattatactcaacattgaatttgcagtgtagaatagtgaaggtggttgctacctgctggt 207  Q
    ||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||| ||||    
T  25631909 ttcatgattttgcttttactctctgcattatactcaacatcgaatttgcagtgtagaataataacggtcgttgctacctggtggt 25631993  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 29855716 - 29855808
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtc 93  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||  ||| |||||||||| ||  ||||||||||||||||    
T  29855716 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgttctttattgttcttccaagacctttttaagatgtc 29855808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 53056598 - 53056502
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||| ||||||||||||||| ||||||||||||| ||| || | |||||||||| ||  |||||||||||||||||||    
T  53056598 gtcttcaggagcagttttcttcaaacgctttaagcttccctttttgttgattcctttgctttttattgttcttccaagacctttttaagatgtcaaa 53056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 14969603 - 14969698
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| ||||||  |||| |||||| |||| ||| ||||||||||||||||||||| |||||  |||||||| || ||||||||||||||||||||    
T  14969603 gtcttaaggagcgattctcttcagatgcttcaagattcctttttgttgattcatttgctctcgtttgttcttccataacctttttaagatgtcaaa 14969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 17238822 - 17238744
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||  |||||||    
T  17238822 cttcaggagcacttctcttcagacgctttaagcttcctttttgttgattccttagctctcttttgttcttaaagaacct 17238744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 41495265 - 41495343
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  41495265 cttcagaagcacttctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 41495343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 33583552 - 33583645
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    ||||||||||||||| | |||| | | ||||| |||||||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  33583552 tcttcaggagcagttttcttcatatgttttaaacttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaa 33583645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 33598172 - 33598265
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    ||||||||||||||| | |||| | | ||||| |||||||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  33598172 tcttcaggagcagttttcttcatatgttttaaacttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaa 33598265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 38177558 - 38177464
Alignment:
Q  2 tcttcaggagcagttctt-ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||| ||||  |||||| | || ||||||||||||||||||||||||| |||| | || ||||| |||||||||||||||||||||||    
T  38177558 tcttcaggagcacttctcattcagatgtttcaagcttcctttttgttgattcatttgctct-tttttttcttccagaacctttttaagatgtcaaa 38177464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13948627 - 13948705
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| ||||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| ||||| || ||||||||    
T  13948627 cttcaagagcacttctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgtttttccagaacct 13948705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 14392874 - 14392755
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| ||||||||||| ||||||||| ||  |||||| |||||||| ||||||||  | ||||| |||||          
T  14392874 cttcaggagcacttctcttcagatgcttcaagcttcctttctgttgattccttagctctcttttgttcttccagaacctaataaagatatcaaatttttg 14392775  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  14392774 tctatggtcctgtacacttg 14392755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 20646446 - 20646524
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||| ||||||||||||||| |||||||||||| ||| |||||| ||||||||  |||||||    
T  20646446 cttcaggagcacttctcttcaaacgctttaagcttccattttgttgattcctttgctctcttttgttcttctagaacct 20646524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 49642647 - 49642569
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| |||||||| ||||||||    
T  49642647 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacct 49642569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 2785386 - 2785482
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||| ||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  2785386 tcttcaggaacagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 2785482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 5216277 - 5216373
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagc-ttcctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||| ||||||||| |||||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  5216277 tcttcaggagcagttttcttcagaagctttaagctttcctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 5216373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 14955752 - 14955843
Alignment:
Q  6 caggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| | |||||||||||||||||| |||||||||| |||  ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  14955752 caggagcagttttcttcagacgctttaagcttccctttttgttaatttctttgctctttattgttcttccaagacctttttaagatatcaaa 14955843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 15903494 - 15903568
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| |||||||| ||||||||    
T  15903494 aggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacct 15903568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 24775370 - 24775273
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctct--ctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||| || | |||| ||||||||||||||| ||||||||||||| ||| ||||  || |||||||| ||| ||||||||||||| |||||    
T  24775370 tcttcaggagcatttttcttcaaacgctttaagcttccatttttgttgattcctttgctcttacttttgttcttccagtacctttttaagatatcaaa 24775273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 37467593 - 37467671
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| || | |||||| |||| |||||||||||||||||||||  ||  ||||| |||||||||||||||||    
T  37467593 cttcaggagcacttatcttcagatgcttcaagcttcctttttgttgattccattgttctcttttgttctttcagaacct 37467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 12726131 - 12726038
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| || |||  ||| ||||||||||||| ||||||| ||   ||||| |||||||| |||||||| ||||||||||||||    
T  12726131 cttcaggagcaattctctttagatccttcaagcttcctttttattgattctttagatctcttttgttcttccagaacctatttaagatgtcaaa 12726038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 40851252 - 40851347
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  40851252 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 40851347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 22141034 - 22141104
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctt 72  Q
    |||||||||||||| | ||||||| |||||||||| ||||||||||||||| ||| ||||  |||||||||    
T  22141034 cttcaggagcagttttcttcagacactttaagcttccctttttgttgattcctttgctcttaattgttctt 22141104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16658516 - 16658475
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttccttt 42  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  16658516 gtcttcaggagcacttctcttcagacgctttaagcttccttt 16658475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 2028576 - 2028624
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  2028576 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 2028624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 13824354 - 13824406
Alignment:
Q  32 aagcttcctttttgttgattcattttctctctattgttctttcagaacctttt 84  Q
    |||||||||||||||||||||  || |||||| |||||||| |||||||||||    
T  13824354 aagcttcctttttgttgattccattgctctcttttgttcttccagaacctttt 13824406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 21606325 - 21606373
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  21606325 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 21606373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 12962962 - 12962891
Alignment:
Q  10 agcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||| |||| ||||||||||| ||||||||||||||||||||| ||    |||| |||||||| ||||||||    
T  12962962 agcacttctcttcagacgcttcaagcttcctttttgttgattccttagtcctcttttgttcttccagaacct 12962891  T

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Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 21605514 - 21605417
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc---tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |   |||||||||||  |||| |||| || |||||| | ||  |||||||||||||||||||    
T  21605514 cttcaggagcagttttcttcagacgctttaagctttcctttttttgttgatgtatttgctctttatttgttcatccaagacctttttaagatgtcaaa 21605417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 21636530 - 21636433
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc---tttttgttgattcattttctctctat-tgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| |||||||| | ||||||||||||||||||||   |||||||||||  |||| |||| ||| |||||||  |  |||||||||||||||||||    
T  21636530 cttcacgagcagttttcttcagacgctttaagcttccctttttttgttgatgtatttgctctttatatgttcttctaagacctttttaagatgtcaaa 21636433  T

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Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 22803969 - 22803891
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||| | | || |||||||||||||||||||||  || |||||| ||||||||  |||||||    
T  22803969 cttcaggagcacttctcttcaaatgtttcaagcttcctttttgttgattccattgctctcttttgttcttctagaacct 22803891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 46349672 - 46349606
Alignment:
Q  27 gctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgt 92  Q
    ||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||| |||||    
T  46349672 gctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaggatgt 46349606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 49666265 - 49666171
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||| |||||||| | |||||||||||||||||| |||||||||||||  | || |||| || |||||||| ||  ||| |||||||||||||||    
T  49666265 ttcaagagcagttttcttcagacgctttaagcttccctttttgttgatgtaattgctctttatttgttcttccaagaccattttaagatgtcaaa 49666171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 46796244 - 46796196
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | ||||||| |||||||||| |||||||||||||    
T  46796244 cttcaggagcagttttcttcagacactttaagcttccctttttgttgat 46796196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 32785741 - 32785622
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||          
T  32785741 cttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctttctattgttcttccagaacctttttaagatgtcaaatttttg 32785642  T
Q  103 nctatggtcctgtacacttg 122  Q
     ||||||||||||| |||||    
T  32785641 tctatggtcctgtatacttg 32785622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22599972 - 22599851
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||  |||| |||||| |||| ||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||        
T  22599972 gtcttcaggagcgcttctcttcagatgcttcaagcttcctttttgttgattcatttgctctcttttgttcttccaaaacctttttaagatgtcaaatttt 22599873  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  22599872 tgtctatggtcctgtacacttg 22599851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 36134463 - 36134584
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||  |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||        
T  36134463 gtcttcaggagcgcttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccagaacctttttaagatgtcaaatttt 36134562  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  36134563 tgtctatggtcctgtacacttg 36134584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22154165 - 22154284
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||          
T  22154165 cttcaggagcacttctcttcagacgcttcaagcttcatttttgttgattcatttgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 22154264  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||| ||||||||||    
T  22154265 tctatggtcatgtacacttg 22154284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16235102 - 16234981
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||  || |||||| |||||||| |||||||||||||| ||| ||||        
T  16235102 gtcttcaggagcacttcttttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacctttttaatatgacaaatttt 16235003  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  16235002 tgtctatggtcctgtacacttg 16234981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22427149 - 22427028
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||| ||||||||| | ||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||        
T  22427149 gtcttcgggagcagttttcttcagacactttaagctttctttttgttgattcctttgctctctattgttctttcaagacctttttaagatgtcaaatttt 22427050  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       | |||||||||||||||||    
T  22427049 tgtcaatggtcctgtacacttg 22427028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1900622 - 1900702
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  1900622 gtcttcaggagcagttctcttcagacgttttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 1900702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 25448323 - 25448228
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||  ||||||||||||| |||||    
T  25448323 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctctattgttcttccaagacctttttaagatatcaaa 25448228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29216072 - 29216167
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||  ||||||||| |||||||||    
T  29216072 gtcttcaggaacagttttcttcagacgctttaagcttcctttttgttgattcttttgatctctattgttcttccaagacctttttaggatgtcaaa 29216167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 1578124 - 1578202
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  1578124 cttcaggagcacttctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgttctttcagaacct 1578202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 2327198 - 2327104
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||||||||    
T  2327198 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaa 2327104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2834979 - 2835075
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| || | |||| ||||||||||||||| ||||||||||||| ||| |||| |||||||||| || ||||||||||||||||||||    
T  2834979 gtcttcaggagcaattttcttcaaacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaaaacctttttaagatgtcaaa 2835075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38282872 - 38282952
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | ||||||||  |||||||    
T  38282872 gtcttcaggagcagttctcttcagacgctttaagcttcctttttattgattcatttgctctattttgttcttctagaacct 38282952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2268817 - 2268912
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||  |||| |||||| |||  || ||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  2268817 gtcttcaggagcgcttctcttcagatgctacaaacttcctttttgatgattcatttgctctcttttgttcttccagaacctttttaagatgtcaaa 2268912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 39200796 - 39200720
Alignment:
Q  20 ttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||| |||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  39200796 ttcatacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 39200720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2267345 - 2267440
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| ||||||| | |||| | |||||||||||||||||||||||||  ||| ||||||||||||||| ||  |||||||||| ||||||||    
T  2267345 gtcttcagaagcagttttcttcatatgctttaagcttcctttttgttgatttctttactctctattgttcttccaagacctttttaaaatgtcaaa 2267440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 19717796 - 19717874
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||| | |||| |||||||| ||||||||    
T  19717796 cttcaggagcacttctcttcagacgctttaagcttcctttttattgattcctttgccctcttttgttcttccagaacct 19717874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 28492220 - 28492146
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||  ||||| || ||||| ||||||||    
T  28492220 aggagcacttctcttcagacgctttaagcttcctttttgttgattcatttgttctcttttattcttccagaacct 28492146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 44821334 - 44821212
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannn 99  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||       
T  44821334 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaattt 44821235  T
Q  100 nnnnctatggtcctgtacacttg 122  Q
        |||| ||||||||||||||    
T  44821234 ttgtctatagtcctgtacacttg 44821212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 10251283 - 10251376
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtca 94  Q
    |||||||||||||| | |||||||||||||||||||| |||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||    
T  10251283 cttcaggagcagttttcttcagacgctttaagcttccatttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtca 10251376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 20954242 - 20954174
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    |||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  20954242 ttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttctt 20954174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22464582 - 22464486
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttc-agaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |||| |  ||||||||||||||||||||||||| ||| |||| |||||||||| | |||   ||||||||||||||||    
T  22464582 gtcttcaggagcagttttcttcatatactttaagcttcctttttgttgattcctttgctctatattgttcttccaagactttttttaagatgtcaaa 22464486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7310093 - 7310185
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| |||| |||||| ||| ||||||||||    |||||||| ||  |||||| |||||||| |||||||| ||||||||||||||    
T  7310093 gtcttcaggagcacttctcttcagatgctataagcttccta---gttgattctttagctctcttttgttcttccagaacctatttaagatgtcaaa 7310185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 21703121 - 21703242
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||| | ||||||||||||||||||| ||||| ||||||  |||| |||| || |||||||| ||  ||| |||||||||||||||        
T  21703121 cttcaggagcagttttcttcagacgctttaagcttctcttttggttgatgtatttgctctttatttgttcttccaagaccattttaagatgtcaaatttt 21703220  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  21703221 tgtctatagtcctgtacacttg 21703242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 10757696 - 10757773
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| ||||| |||| |||| |||||| |||||||||||| |||||||| ||  |||||| |||||||||||||||||    
T  10757696 cttcaagagcacttctcttcaaacgcttcaagcttcctttt-gttgattccttagctctcttttgttctttcagaacct 10757773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35040439 - 35040480
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttccttt 42  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  35040439 gtcttcaggagcagttttcttcagacgctttaagcttccttt 35040480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 23025053 - 23025101
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  23025053 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 23025101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 21120859 - 21120764
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  21120859 cttcaggagcagttttcttcagacgcttaaagcttccctttttgttgatatacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 21120764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 21984863 - 21984958
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  21984863 cttcaggagcagttttcttcagacgcttaaagcttccctttttgttgatgtacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 21984958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 30572457 - 30572552
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||| ||| |||||||||||||  |||| |||| || || ||||| ||  ||| |||||||||||||||    
T  30572457 cttcaggagcagttttcttcagacgctttaaacttccctttttgttgatgtatttgctctttatttattcttccaagaccattttaagatgtcaaa 30572552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33256143 - 33256072
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||| ||||| |||| |||| |||| ||||||||| ||||||||||||| ||| ||||||  |||||||    
T  33256143 gtcttcaagagcacttctcttcaaacgccttaagcttcatttttgttgattcctttgctctcttctgttctt 33256072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33276315 - 33276244
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||| ||||| |||| |||| |||| ||||||||| ||||||||||||| ||| ||||||  |||||||    
T  33276315 gtcttcaagagcacttctcttcaaacgccttaagcttcatttttgttgattcctttgctctcttctgttctt 33276244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 48704491 - 48704569
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| || ||| |||| ||||||| ||||||||||||   || |||||| |||||||| ||||||||    
T  48704491 cttcaggagcacttctctttagatgcttcaagcttcatttttgttgatttcattgctctcttttgttcttccagaacct 48704569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 12284730 - 12284779
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| |||| |||||| | || |||||||||||||||||||||    
T  12284730 cttcaggagcacttctcttcagatgtttcaagcttcctttttgttgattc 12284779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21204722 - 21204625
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| || | || ||||||||||||||| |||||||||||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  21204722 gtcttcaggagcacttttctttagacgctttaagcttccctttttgttgatgtacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 21204625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 35402146 - 35402203
Alignment:
Q  39 ctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||  || |||||| |||||||| || ||||||||||||||| ||||    
T  35402146 ctttttgttgattccattgctctcttttgttcttccataacctttttaagatgacaaa 35402203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 21134955 - 21134907
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||||||    
T  21134955 cttcaggagcagttttcttcagacgcttaaagcttccctttttgttgat 21134907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13575972 - 13575877
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  13575972 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctctctattgttcttccaagacctttttaagatgtcaaa 13575877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10073206 - 10073301
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  10073206 gtcttcaggagcacttttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccataacctttttaagatgtcaaa 10073301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 37435347 - 37435228
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||          
T  37435347 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcatttgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 37435248  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  37435247 tctatggtcctgtacacttg 37435228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 3497928 - 3498012
Alignment:
Q  12 cagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| || ||||||||||||||||||||    
T  3497928 cagttctcttcagacgctttaagcttcctttttgttgattcctttgctctatattgttcttccaaaacctttttaagatgtcaaa 3498012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45833679 - 45833800
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||  ||||||||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| || ||||||||||||||||||||        
T  45833679 gtcttcaggagcgcttcttttcagatgcttcaagcttcctttttgttgattcgtttgctctcttttgttcttccaaaacctttttaagatgtcaaatttt 45833778  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||| ||||||||||    
T  45833779 tgtctatggtcatgtacacttg 45833800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 3395911 - 3395989
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  3395911 cttcaggagcagttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 3395989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 56034844 - 56034963
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||| || || | ||||||||||| |||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||          
T  56034844 cttcaggatcacttttcttcagacgcttcaagctttctttttgttgattcatttgctctcttttgttcttccagaacctttttaagatgtcaaatttttg 56034943  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||| ||||||||||    
T  56034944 tctatggtcatgtacacttg 56034963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 14604733 - 14604640
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| |||||||| || ||||||||||||||||||||| ||  |||||| |||||||| |||||||||||||||||||||||    
T  14604733 cttcaggagcacttctcttcagacgtttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacctttttaagatgtcaaa 14604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 54680181 - 54680276
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||| ||||    
T  54680181 gtcttcaggagcaattttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgacaaa 54680276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 3793376 - 3793469
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||| |||||||||| |||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  3793376 cttcaggagcagttttcttcagacactttaagctttctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 3793469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 19620918 - 19620799
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||||||||  ||| |||||| |||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||  | ||||| |||||          
T  19620918 cttcaggagcacgtctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacctaataaagatatcaaatttttg 19620819  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  19620818 tctatggtcctgtacacttg 19620799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 55732079 - 55732173
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||||||  ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  55732079 tcttcaggagcagttttcttcagacgctttaagcttcccttttgttgatttctttgctctttattgttcttccaagacctttttaagatatcaaa 55732173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 9141146 - 9141226
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||| |||||| |||||||| || |||||    
T  9141146 gtcttcaggagcacttctcttcagacgccttaagcttcctttttgttgattcctttgctctcttttgttcttccataacct 9141226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29121657 - 29121753
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||| |||||| | |||||||| ||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  29121657 gtcttcaggtgcagttttcttcagacgttttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 29121753  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 14904146 - 14904067
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| || |||||| ||||||||||||||||||| |||||||| |||||||| |||||| |||||||| ||||||||    
T  14904146 tcttcagaaggagttctcttcagacgctttaagcttcttttttgtttattcatttgctctcttttgttcttccagaacct 14904067  T

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Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19884972 - 19885095
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctt--tttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaann 98  Q
    |||||||||||||||| | ||||||||||||||||||||||  |||||||||||  || ||||||||| ||||| ||  ||| |||||||||||||||      
T  19884972 gtcttcaggagcagttttcttcagacgctttaagcttccttggtttgttgattccattgctctctattattcttccaagaccattttaagatgtcaaatt 19885071  T
Q  99 nnnnnctatggtcctgtacacttg 122  Q
         |||| ||||||||||||||    
T  19885072 tttgtctatagtcctgtacacttg 19885095  T

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Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 12811020 - 12810901
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| |||| ||||  ||||| |||  |||||||||||||||||||||  || |||||| |||||||| |||||||| ||||||||||||||          
T  12811020 cttcagaagcacttctgctcagatgctacaagcttcctttttgttgattccattgctctcttttgttcttccagaacctatttaagatgtcaaatttttg 12810921  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  12810920 tctatggtcctgtacacttg 12810901  T

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Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 16853765 - 16853858
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||| ||| ||||  |||||||||  |  ||||||||||||| |||||    
T  16853765 cttcaggagcagatttcttcagacgctttaagcttcctttttgttgattcctttgctcttaattgttcttcaaagacctttttaagatatcaaa 16853858  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 55380528 - 55380605
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacc 80  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||  |||||| ||||| ||||||||||    
T  55380528 cttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccttagctctcttttgttttttcagaacc 55380605  T

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Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22675378 - 22675283
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| ||||| |||| | ||||||||||||||| |||  |||||||||||| ||| ||||||||||||||| ||  |||| ||||||||||||||    
T  22675378 gtctttaggagaagttttcttcagacgctttaagattcaattttgttgattcctttgctctctattgttcttccaagacctctttaagatgtcaaa 22675283  T

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Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 6517771 - 6517868
Alignment:
Q  2 tcttcaggagcagttctt-ttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  6517771 tcttcaggagcagtttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 6517868  T

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Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 8105955 - 8106023
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgtt 69  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||| |||| |||||||    
T  8105955 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgtt 8106023  T

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Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12601384 - 12601464
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| |||| || |||| |||||| || ||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  12601384 gtcttaaggaacacttctcttcagatgccttaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 12601464  T

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Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 25650966 - 25650872
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  ||||| |||||||||||||    
T  25650966 ttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaataccttcttaagatgtcaaa 25650872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 17247543 - 17247639
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | |  |||| |||||||||| ||||||||||||||| ||| |||| | |||||||| ||  ||||||||| |||||||||    
T  17247543 gtcttcaggagcagttttctggagacactttaagctttcctttttgttgattcctttgctctttgttgttcttccaagacctttttaggatgtcaaa 17247639  T

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Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 16940247 - 16940346
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttccttttt-----gttgattcattttctctctatt-gttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||||||||||     ||||||  |||| |||| |||| |||||| ||  |||||||||||||||||||    
T  16940247 cttcaggagcagttttcttcagacgctttaagcttccttttttttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 16940346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 3105280 - 3105157
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaann 98  Q
    |||||||||||||||| | ||||||| |||||||||| |||||||||||||  | || |||| || |||||||| || ||||  ||||||||||||||      
T  3105280 gtcttcaggagcagttttcttcagacactttaagcttccctttttgttgatgtacttgctctttatttgttcttccaaaaccaatttaagatgtcaaatt 3105181  T
Q  99 nnnnnctatggtcctgtacacttg 122  Q
         |||| ||||||||||||||    
T  3105180 tttgtctatagtcctgtacacttg 3105157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 16632728 - 16632802
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| ||||| || ||||||||    
T  16632728 aggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgtttttccagaacct 16632802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 29680384 - 29680306
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||| || |||| ||||||  ||| ||||||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  29680384 cttcaggaacacttctcttcagatacttcaagcttcctttttgttgattcctttgctctcttttgttcttctagaacct 29680306  T

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Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 10693137 - 10693233
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttc-agaacctttttaagatgtcaaa 96  Q
    |||||| |||| ||| | |||| ||||||||||||||| ||||||||||||| ||| |||| ||||||| || | ||| | ||||||||||||||||    
T  10693137 tcttcatgagctgttttcttcaaacgctttaagcttccctttttgttgattcctttgctctttattgtttttccaagaccttttttaagatgtcaaa 10693233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 10906903 - 10906999
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttc-agaacctttttaagatgtcaaa 96  Q
    |||||| |||| ||| | |||| ||||||||||||||| ||||||||||||| ||| |||| ||||||| || | ||| | ||||||||||||||||    
T  10906903 tcttcatgagctgttttcttcaaacgctttaagcttccctttttgttgattcctttgctctttattgtttttccaagaccttttttaagatgtcaaa 10906999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 14571312 - 14571360
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  14571312 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 14571360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 22191126 - 22191174
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  22191126 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 22191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 40846368 - 40846447
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacct 81  Q
    ||||||||||| || | |||||| |||| |||||||||||||||||||||  |  ||||| | |||||||||||||||||    
T  40846368 cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgattccataactctcaatttgttctttcagaacct 40846447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 39419564 - 39419471
Alignment:
Q  5 tcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||| | ||||||||||| |||||| ||||||||||||   | || |||| || |||||||||||| |||  ||||||||||||||    
T  39419564 tcaggagcagttttcttcagacgcttgaagcttccctttttgttgaaatacttgctctttatttgttctttcaggaccaatttaagatgtcaaa 39419471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40860961 - 40861002
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttccttttt 44  Q
    |||||||||||||| | |||||||||||||||||||| ||||    
T  40860961 cttcaggagcagttttcttcagacgctttaagcttccctttt 40861002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14153808 - 14153685
Alignment:
Q  1 gtcttcaggagcagttctt-ttcaga--cgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaan 97  Q
    ||||||||||||||||||| ||||||  |||||||||||||| ||| |||| ||| ||  |||||| |||| |  ||||||||| |||||||||| |||     
T  14153808 gtcttcaggagcagttcttcttcagaagcgctttaagcttcc-tttcgttgtttccttagctctcttttgtccaatcagaacctctttaagatgttaaat 14153710  T
Q  98 nnnnnnctatggtcctgtacacttg 122  Q
          ||||||||||||| |||||    
T  14153709 ttttgtctatggtcctgtatacttg 14153685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7979 - 8100
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||| || | |||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||        
T  7979 gtcttcaggagcaattttcttcagacgctttaagctttctttttgttgattcctttgctctctattgttcttccagaacctttttaagatgtcaaagttt 8078  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       ||||| |||||||||||||    
T  8079 tgtctatgatcctgtacacttg 8100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 19327 - 19419
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| | |||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  19327 ttcaggagcagttttcttcagatgctttaagcttcctttttgttgattcctttgctctctattgttcttccagaacctttttaagatgtcaaa 19419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 9853 - 9948
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||| |||||||||||||| |||||||||||||  | || |||| || |||||||| ||  |||||||||||||||||||    
T  9853 cttcaggagcagttttcttctgacgctttaagcttccctttttgttgatgtacttgctctttatttgttcttccaagacctttttaagatgtcaaa 9948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21938 - 21841
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctctatt-gttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||  | |||||||  |||||||||| ||||||||||||  |||| |||| |||| |||||| ||  |||||||||||||||||||    
T  21938 gtcttcaggagcagtattcttcagacattttaagcttcactttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 21841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 103846 - 103967
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||||||||  |||| |||||| |||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||        
T  103846 gtcttcaggagcgcttctcttcagatgcttcaagcttcctatttgttgattcatttgctctcttttgttctttcagaacctttttaagatgtcaaatttt 103945  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       ||| |||||||||||||||    
T  103946 tgtctaaggtcctgtacacttg 103967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 143380 - 143501
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||| |||||||| | ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||| ||||||||        
T  143380 gtcttcaagagcagttttcttcagacgctttaagcttcctttttcttgattcctttgctctctattgttcttccagaacctttttaatatgtcaaatttt 143479  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||| ||||||||    
T  143480 tgtctatggtcctatacacttg 143501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 509 - 414
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  509 gtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 414  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 7745508 - 7745393
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnncta 106  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||       |||    
T  7745508 aggagcacttctcttcagacgcttcaagcttcctttttgttgatccatttgctctcttttgttctttcagaacctatttaagatgtcaaatttttgtcta 7745409  T
Q  107 tggtcctgtacacttg 122  Q
    |||| |||||||||||    
T  7745408 tggttctgtacacttg 7745393  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33022934 - 33023028
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaa 95  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||| ||  ||||||||||||||||||    
T  33022934 gtcttcaggagcagtttttttcagacgttttaagcttcctttttgttgattcctttgctctcgattgttcttccaagacctttttaagatgtcaa 33023028  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21910812 - 21910892
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  21910812 gtcttcaggagcacttctcttcagacgctttaagcttcctttttgttgattcatttgctctcttttgttcttctagaacct 21910892  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5430154 - 5430249
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||| || | ||| ||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  5430154 gtcttcaggagcacttttcttcggacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 5430249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31118146 - 31118241
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||| ||| |||| | ||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||  |||||||||||||||||||    
T  31118146 gtcttcatgagtagttttcttcagacgctttaagcttcctttttgttgattcctttgctctttattgttcttccaagacctttttaagatgtcaaa 31118241  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26784627 - 26784698
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  26784627 gtcttcaggagcacttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttctt 26784698  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 33933589 - 33933678
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctctattgttctttcagaacctttttaagat 90  Q
    ||||||||||||||| | |||||||| |||||||||| |||||||||||||| ||| ||||||||||||||| ||  |||||||||||||    
T  33933589 tcttcaggagcagttttcttcagacgatttaagcttctctttttgttgattcctttgctctctattgttcttccaagacctttttaagat 33933678  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 15517257 - 15517353
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||||||  |||||||||||||||||||    
T  15517257 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttctttcaagacctttttaagatgtcaaa 15517353  T

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Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17815253 - 17815333
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| |||||| | |||||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  17815253 gtcttcaggagcacttctcttcagatgttttaagcttcctttttgttgattcctttactctcttttgttcttccagaacct 17815333  T

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Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14086404 - 14086333
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctt 72  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  14086404 gtcttcaggagcagttttcttcatacgctttaagcttcctttttgttgattcctttgctctttattgttctt 14086333  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 20551149 - 20551269
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttt-tgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    ||||||||||| |||| |||||| |||| |||||||||||| |||||||||  || |||||| |||||||| |||||||| ||||||||||||||         
T  20551149 cttcaggagcacttctcttcagatgcttcaagcttccttttttgttgattccattgctctcttttgttcttccagaacctatttaagatgtcaaattttt 20551248  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||||||||| ||||||||    
T  20551249 gtctatggtcctctacacttg 20551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 26759467 - 26759556
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagat 90  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||  |||| |||| || |||||||| ||  |||||||||||||    
T  26759467 tcttcaggagcagttttcttcagacgctttaagcttcctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagat 26759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 9089199 - 9089320
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaannnn 100  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||        
T  9089199 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaatttt 9089298  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||| ||||||||||||||    
T  9089299 tgtctatagtcctgtacacttg 9089320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 6512313 - 6512235
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||| || |||| ||||||||| ||||||||||||||||||||||||||| || ||| ||||||||  |||||||    
T  6512313 cttcaggaacatttctcttcagacgccttaagcttcctttttgttgattcatttgctatcttttgttcttcaagaacct 6512235  T

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Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 11994202 - 11994296
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||| ||||||||||||| ||||||||||||| ||| ||||  ||||||||| ||  ||||||||||||| |||||    
T  11994202 cttcaggagcagttttcttcagatgctttaagcttccctttttgttgattcctttgctcttaattgttcttccaagacctttttaagatatcaaa 11994296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 21072105 - 21072028
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||| ||||| |||| ||||||||||| ||||||||||||||||||||| ||  |||| | |||||||||||||||||    
T  21072105 ttcatgagcacttctcttcagacgcttcaagcttcctttttgttgattccttagctcttttttgttctttcagaacct 21072028  T

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Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29138260 - 29138163
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| ||||| | |||||||||||||||||||| |||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  29138260 gtcttcaggaacagttttcttcagacgctttaagcttccatttttgttgatgtatttgctctttacttgttcttccaagacctttttaagatgtcaaa 29138163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 3245289 - 3245194
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  ||| |||||||||||||||    
T  3245289 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaagaccattttaagatgtcaaa 3245194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 4887293 - 4887364
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctt 72  Q
    |||| |||| ||||| | |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  4887293 tctttaggaacagttttcttcagacgctttaagcttccctttttgttgattcctttgctctctattgttctt 4887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 30115740 - 30115645
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||  |||| |||| || |||||||| ||  ||| |||||||||||||||    
T  30115740 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgatgtatttgctctttatttgttcttccaataccattttaagatgtcaaa 30115645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 42243984 - 42244079
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| ||| | |||| ||||||||||||||| ||||||||||||  ||| |||| |||||||||| ||  ||||||||||||| |||||    
T  42243984 tcttcaggagctgttttcttcatacgctttaagcttccctttttgttgatttctttgctctttattgttcttccaatacctttttaagatatcaaa 42244079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 89302 - 89224
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||| |||| |||| ||||||| ||| ||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  89302 cttcagaagcacttctcttcagacacttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 89224  T

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Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 23412856 - 23412778
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||  || |||||| ||| |||| ||||||||    
T  23412856 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgctcttccagaacct 23412778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 28139858 - 28139954
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||| ||||||||||| |||| ||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  28139858 tcttcaggagcagttttcttcagatgctttaagcttcccttgttgttgatgtatttgctctttatttgttcttccaatacctttttaagatgtcaaa 28139954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41566299 - 41566248
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    |||||||||||||||||| |||||||| ||||| |||| |||||||||||||    
T  41566299 gtcttcaggagcagttctcttcagacgttttaaccttcatttttgttgattc 41566248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 30743298 - 30743388
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagc-ttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatg 91  Q
    |||||||||| |||| | |||||||||||||||| |||||||||| ||| |  ||| |||| |||||||||| ||  ||||||||||||||    
T  30743298 tcttcaggagtagttttcttcagacgctttaagctttcctttttgctgagttctttgctctttattgttcttccaagacctttttaagatg 30743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 12352684 - 12352635
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  12352684 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattc 12352635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 10849054 - 10849102
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  10849054 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 10849102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 25930027 - 25929933
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||| |||||||| | |||||||||||||| ||||| |||||||||||  |||| |||| || ||||||||||| |  |||||||||||||||||    
T  25930027 cttcaagagcagttttcttcagacgctttaaccttccatttttgttgatgtatttgctctttacttgttctttca-agactttttaagatgtcaaa 25929933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 21198887 - 21198838
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    |||||||||||||  | |||||| |||| |||||||||||||||||||||    
T  21198887 cttcaggagcagtattcttcagatgcttcaagcttcctttttgttgattc 21198838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 6499520 - 6499556
Alignment:
Q  15 ttcttttcagacgctttaagcttcctttttgttgatt 51  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  6499520 ttcttttcagatgcttcaagcttcctttttgttgatt 6499556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1331 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1331
Description:

Target: scaffold1331; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 429 - 336
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||||||||||||||||||||| ||||||||||| |||| | |||||||| || ||||||||||||||||||||    
T  429 cttcaggagcagttttcttcagacgctttaagcttcctttttattgattcatttgctctttgttgttcttccaaaacctttttaagatgtcaaa 336  T

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Target: scaffold0227 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 22952 - 23045
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  22952 cttcaggagtagttctcttcagacgctttaagcttcatttttgttgattcttttgctctctattgttcttccaagacctttttaagatgtcaaa 23045  T

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Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 89892 - 89797
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| || || | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  89892 gtcttcaggaacaattttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccaagacctttttaagatgtcaaa 89797  T

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Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 212645 - 212738
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| |||||||| || ||||||||||||||||||||| ||  |||||| |||||||| |||||||||||||||||||||||    
T  212645 cttcaggagcacttctcttcagacgtttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacctttttaagatgtcaaa 212738  T

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Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 246064 - 246016
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||    
T  246064 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 246016  T

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Target: scaffold0485 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 9195 - 9103
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| || |||| ||||||||||| |||||||||||| |||||||||||| |||||| |||||||| |||||||| ||||||||||||||    
T  9195 cttcaggatcacttctcttcagacgcttcaagcttcctttt-gttgattcatttgctctcttttgttcttccagaacctatttaagatgtcaaa 9103  T

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Target: scaffold0116 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 20790 - 20697
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| ||||||||||| || |||||||||||||||||| ||  |||||| |||||||| |||||||| ||||||||||||||    
T  20790 cttcaggagcacttctcttcagacgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaacctatttaagatgtcaaa 20697  T

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Target: scaffold0439 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 6528 - 6408
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  ||||||||||||| |||||         
T  6528 cttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaagatatcaaattttt 6429  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||| ||||||||||||||    
T  6428 gtctatagtcctgtacacttg 6408  T

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Target: scaffold0359 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 5511 - 5391
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctc-tattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    ||||||||||| |||| ||||||||||| ||| |||||||| |||||||||||| ||||| | |||||||| |||||||| ||||||||||||||         
T  5511 cttcaggagcacttctcttcagacgcttcaaggttccttttagttgattcatttgctctcattttgttcttccagaacctatttaagatgtcaaattttt 5412  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||||||||||||| ||||    
T  5411 gtctatggtcctgtacgcttg 5391  T

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Target: scaffold0012 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 215301 - 215206
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  | |||||||||||||||||    
T  215301 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagatctttttaagatgtcaaa 215206  T

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Target: scaffold0171 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 27264 - 27145
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| |||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| ||||| ||||||||||| |||||||||| | |          
T  27264 cttcagaagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttatttcagaacctatttaagatgttagatatttt 27165  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  27164 tctatggtcctgtacacttg 27145  T

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Target: scaffold0026 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8186 - 8266
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||||||||| |||||||| |||||||||||||| ||| |||||| |||||||| ||||||||    
T  8186 gtcttcaggagcacttctcttcagacgccttaagcttactttttgttgattcctttgctctcttttgttcttccagaacct 8266  T

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Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 60305 - 60426
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnn 100  Q
    ||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||| ||| |||||| |||||||| ||||||||  | | |||||||||        
T  60305 gtcttcaagagcatttctcttcagacgccttaagcttcatttttgttgattcctttgctctcttttgttcttccagaacctaataatgatgtcaaatttt 60404  T
Q  101 nnnctatggtcctgtacacttg 122  Q
       |||||||||||||||||||    
T  60405 tgtctatggtcctgtacacttg 60426  T

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Target: scaffold0452 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 1688 - 1593
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||  |  ||||||||||||| |||||    
T  1688 tcttcaggagcagttttcttcagacgctttaagcttccctttttgttgattcctttgctctttattgttcttctaagacctttttaagatatcaaa 1593  T

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Target: scaffold0043 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 78185 - 78090
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||||||||||| ||| ||||||||||||||| ||| |||| |||||||||| ||  | |||||||||||||||||    
T  78185 tcttcaggagcagttttcttcagacgctttaatctttcctttttgttgattcctttgctctttattgttcttccaagatctttttaagatgtcaaa 78090  T

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Target: scaffold0334 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 10085 - 10204
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    |||||| |||| |||| |||||| |||| |||||||||||||||||||||  || |||||| ||||||||||||||||| || ||||| |||||          
T  10085 cttcagaagcatttctcttcagatgcttcaagcttcctttttgttgattccattcctctcttttgttctttcagaacctattgaagatatcaaatttttg 10184  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||| ||||||||||    
T  10185 tctatggtcatgtacacttg 10204  T

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Target: scaffold0243 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 4829 - 4751
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||| || ||||||||  |||||||    
T  4829 cttcaggagcacttctcttcagacgctttaagcttcctttttgttgattcctttgctcccttttgttcttctagaacct 4751  T

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Target: scaffold0146 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 15377 - 15455
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||  |||||||    
T  15377 cttcaggagcacttctcttcagacgctttaagcttcctttttgttgattccttagctctcttttgttcttaaagaacct 15455  T

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Target: scaffold0083 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 25811 - 25733
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  25811 cttcaggagcacttctcttcagacgccttaatcttcctttttgttgattcctttgctctcttttgttcttccagaacct 25733  T

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Target: scaffold0022 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 39703 - 39781
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  39703 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 39781  T

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Target: scaffold0022; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 137763 - 137841
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  137763 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccagaacct 137841  T

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Target: scaffold0479 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 10228 - 10321
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||| |||| |||||| |||| ||||||||||||| ||||||| ||   ||||| |||||||| |||||||| ||||||||||||||    
T  10228 cttcaggagcacttctcttcagatgcttcaagcttcctttttattgattctttagatctcttttgttcttccagaacctatttaagatgtcaaa 10321  T

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Target: scaffold0426 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13901 - 13981
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||||| |||| ||| ||||| |||||||||||||| |||||||| ||| |||||| |||||||| ||||||||    
T  13901 gtcttcaggagcacttctcttctgacgcattaagcttccttttcgttgattcctttgctctcttttgttcttccagaacct 13981  T

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Target: scaffold0861 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 4766 - 4687
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctt 82  Q
    ||||||||||| |||| |||||| |||| || |||||||||||||||||| ||| |||||| |||||||| |||||||||    
T  4766 cttcaggagcacttctcttcagatgcttcaaacttcctttttgttgattcctttgctctcttttgttcttccagaacctt 4687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 12501 - 12621
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    |||||||||| | || | |||| | |||| |||||||||||||||||||||  || |||||| |||||||| |||||||| ||||||||||||||         
T  12501 tcttcaggagaacttttattcaaatgcttcaagcttcctttttgttgattccattactctcttttgttcttccagaacctatttaagatgtcaaattttt 12600  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||||||| ||||||||||    
T  12601 gtctatggtcttgtacacttg 12621  T

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Target: scaffold0210 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1920 - 2007
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaag 88  Q
    ||||||||||||| |||| | |||| |||||||||||||||||| ||||||| ||| |||||| |||||||| ||| |||| ||||||    
T  1920 gtcttcaggagcacttctctgcagatgctttaagcttcctttttattgattcctttgctctcttttgttcttccaggacctatttaag 2007  T

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Target: scaffold0028 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 5406 - 5311
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttcc-tttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||| ||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||  |||||||||| || |||||    
T  5406 tcttcaggagcagttttcttcaaacgctttaagcttccctttttgttgattcctttgctctttattgttcttccaagacctttttaaaatatcaaa 5311  T

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Target: scaffold0771 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 767 - 845
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| ||||| |||| |||||| |||||||||||||||||||||||||| ||| |||||| ||||| || ||||||||    
T  767 cttcaagagcacttctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgtttttccagaacct 845  T

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Target: scaffold0290 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 18440 - 18362
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||||||||| ||| |||||| |||||||| || |||||    
T  18440 cttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccaaaacct 18362  T

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Target: scaffold0066 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 60704 - 60585
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||  ||  || || ||||||||||||||  | ||||| |||||          
T  60704 cttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccttagcttcctttttttctttcagaacctaataaagatatcaaatttttg 60605  T
Q  103 nctatggtcctgtacacttg 122  Q
     |||||||||||||||||||    
T  60604 tctatggtcctgtacacttg 60585  T

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Target: scaffold1434 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1434
Description:

Target: scaffold1434; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 608 - 552
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcatttt 57  Q
    ||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||    
T  608 gtcttcaggagcacttctcttcagacactttaagcttcctttttgttgattcctttt 552  T

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Target: scaffold0471 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 3626 - 3722
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | ||||||| |||||||||| |||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  3626 tcttcaggagcagttttcttcagacactttaagcttccctttttgttgatgtatttgctctttatttgttcttccaatacctttttaagatgtcaaa 3722  T

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Target: scaffold0084 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32762 - 32842
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||| |||| || | ||||||||| ||||||||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  32762 gtcttcagaagcacttttcttcagacgccttaagcttcctttttgttgattcctttactctcttttgttcttctagaacct 32842  T

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Target: scaffold0084; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49608 - 49688
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctt 82  Q
    ||||||| ||||| |||| ||| ||||| ||||||||||||||||||||||| ||| |||||| |||||||| ||| |||||    
T  49608 gtcttcaagagcacttctcttc-gacgccttaagcttcctttttgttgattcctttgctctcttttgttcttccagcacctt 49688  T

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Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 1995 - 2071
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaac 79  Q
    ||||||||||| |||| ||||||| ||||||||||| ||||||||||||| ||  |||||| |||||||| ||||||    
T  1995 cttcaggagcacttctcttcagacactttaagcttcatttttgttgattccttcgctctcttttgttcttccagaac 2071  T

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Target: scaffold0527 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 162 - 256
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||  |||| |||| || |||||||| ||  ||| ||||||| |||||||    
T  162 cttcaggagcagttttcttcagacgctttaagcttcccttttgttgatgtatttgctctttatttgttcttccaagaccattttaagttgtcaaa 256  T

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Target: scaffold0527; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 8225 - 8319
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||  |||| |||| || |||||||| ||  ||| ||||||| |||||||    
T  8225 cttcaggagcagttttcttcagacgctttaagcttcccttttgttgatgtatttgctctttatttgttcttccaagaccattttaagttgtcaaa 8319  T

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Target: scaffold0337 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 14957 - 15031
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||||||| ||  |||||| |||||||| ||||||||    
T  14957 aggagcacttctcttcagacactttaagcttcatttttgttgattccttcgctctcttttgttcttccagaacct 15031  T

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Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 9956 - 9838
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnn 102  Q
    ||||||||||| |||| |||| |  ||| |||||||||||||||||||||  || |||||| |||||||| ||||| || ||||||||||||||          
T  9956 cttcaggagcacttctcttcatattcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaa-ctatttaagatgtcaaatttttg 9858  T
Q  103 nctatggtcctgtacacttg 122  Q
      ||||||||||||||||||    
T  9857 tttatggtcctgtacacttg 9838  T

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Target: scaffold0120 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 36583 - 36476
Alignment:
Q  15 ttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatggtcctg 114  Q
    |||| |||||| |||| ||||||||||||  |||||||  || |||||| |||||||| || ||||| ||||||||||||||       |||||||||||    
T  36583 ttctcttcagatgcttcaagcttccttttatttgattccattgctctcttttgttcttccataacctatttaagatgtcaaatttttgtctatggtcctg 36484  T
Q  115 tacacttg 122  Q
    ||||||||    
T  36483 tacacttg 36476  T

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Target: scaffold0120; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 42422 - 42529
Alignment:
Q  15 ttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnnnnctatggtcctg 114  Q
    |||| |||||| |||| ||||||||||||  |||||||  || |||||| |||||||| || ||||| ||||||||||||||       |||||||||||    
T  42422 ttctcttcagatgcttcaagcttccttttatttgattccattgctctcttttgttcttccataacctatttaagatgtcaaatttttgtctatggtcctg 42521  T
Q  115 tacacttg 122  Q
    ||||||||    
T  42522 tacacttg 42529  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 377395 - 377317
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| | || ||||||| |||||||||||||||| |||||||| ||  |||||| |||||||| ||||||||    
T  377395 cttcaggagcactactcttcagacactttaagcttccttttagttgattccttagctctcttttgttcttccagaacct 377317  T

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Target: scaffold0004; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 30689 - 30612
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||||||||| || | ||||||||  |||||||||| |||||||||||| ||| |||||| |||||||| ||||||||    
T  30689 cttcaggagcaatt-tcttcagacgtcttaagcttccattttgttgattcctttgctctcttttgttcttccagaacct 30612  T

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Target: scaffold0004; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 220528 - 220607
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctcta-ttgttctttcagaacct 81  Q
    ||||||||||| || | ||||||||||| ||| |||||||||||||||||  |  ||||| | |||||||||||||||||    
T  220528 cttcaggagcacttttcttcagacgcttcaaggttcctttttgttgattccatagctctcaatttgttctttcagaacct 220607  T

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Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 61095 - 61191
Alignment:
Q  2 tcttcaggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    ||||||||||||||| | |||||| |||||||||| | ||||||||||||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  61095 tcttcaggagcagttttcttcagatgctttaagctccactttttgttgatgtatttgctctttatttgttcttccaagacctttttaagatgtcaaa 61191  T

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Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 19294 - 19174
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcct-ttttgttgattcattttctctctattgttctttcagaacctttttaagatgtcaaannnnn 101  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||||| || ||  |||||| |||||||| || |||||  | ||||| |||||         
T  19294 cttcaggagcacttctcttcagacgcttcaagcttccttttttgttgactccttagctctcttttgttcttccataacctaataaagatatcaaattttt 19195  T
Q  102 nnctatggtcctgtacacttg 122  Q
      |||||||||||||||||||    
T  19194 gtctatggtcctgtacacttg 19174  T

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Target: scaffold0035; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 98992 - 98901
Alignment:
Q  7 aggagcagttcttttcagacgctttaagcttc-ctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||| | |||||| |||||||||||| |||||||| |||  |||| |||| || |||||||| ||  |||||||||||||||||||    
T  98992 aggagcagttttcttcagaagctttaagcttcactttttgtcgatgtatttgctctttacttgttcttccaagacctttttaagatgtcaaa 98901  T

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Target: scaffold0247 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 23400 - 23350
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  23400 gtcttcaggagcagttttcttcagacgctttaagcttccctttttgttgat 23350  T

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Target: scaffold0414 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 6958 - 6862
Alignment:
Q  3 cttcaggagcagttcttttcagacgc-tttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | ||||||||| ||||||||| |||||||||||||   ||| |||| || |||||||| ||  |||||||||||||||||||    
T  6958 cttcaggagcagttttcttcagacgcttttaagcttccctttttgttgatgtgtttgctctttatttgttcttccaagacctttttaagatgtcaaa 6862  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 8576 - 8640
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctctatt 66  Q
    |||||||||||||| | ||||||| |||||||||| |||||||||||||  ||||||||| ||||    
T  8576 cttcaggagcagttttcttcagacactttaagcttccctttttgttgatgtattttctctttatt 8640  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 87420 - 87325
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||  | || |||| || |||||||||||  |||  ||||||||||||||    
T  87420 cttcaggagcagttttcttcagacgctttaagcttccctttttgctgatatacttgctctttatttgttctttcaagaccaatttaagatgtcaaa 87325  T

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Target: scaffold0261 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 5773 - 5695
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    ||||| ||||| || | |||||| |||| || |||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  5773 cttcatgagcacttttcttcagatgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaacct 5695  T

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Target: scaffold0607 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7204 - 7301
Alignment:
Q  1 gtcttcaggagcagttcttttcagacgctttaagctt-cctttttgttgattcattttctctcta-ttgttctttcagaacctttttaagatgtcaaa 96  Q
    |||||||| ||||||| | |||||| ||||||||||| |||||| ||||||  |||| |||  || |||||||| ||  |||||||||||||||||||    
T  7204 gtcttcagtagcagttttcttcagatgctttaagcttcccttttggttgatgtatttgctccttatttgttcttccaagacctttttaagatgtcaaa 7301  T

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Target: scaffold0395 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 13352 - 13275
Alignment:
Q  4 ttcaggagcagttcttttcagacgctttaagcttcctttttgttgattcattttctctctattgttctttcagaacct 81  Q
    |||||||||| |||| |||||| |||| ||||||| ||||||||||||| ||  || ||| ||| | |||||||||||    
T  13352 ttcaggagcacttctcttcagatgcttcaagcttcttttttgttgattctttagctttcttttggtttttcagaacct 13275  T

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Target: scaffold0324 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10229 - 10278
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    ||||||||||| || | ||||||||||| |||||||||||||||| ||||    
T  10229 cttcaggagcacttttcttcagacgcttcaagcttcctttttgtttattc 10278  T

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Target: scaffold0193 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 16071 - 16120
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagcttcctttttgttgattc 52  Q
    |||||||||||  ||| |||||| |||| |||||||||||||||||||||    
T  16071 cttcaggagcacatctcttcagatgcttcaagcttcctttttgttgattc 16120  T

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Target: scaffold0249 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 17592 - 17544
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||||| ||||| | |||||||||||||||||| |||||||||||||    
T  17592 cttcaggatcagttttcttcagacgctttaagcttccctttttgttgat 17544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 65246 - 65198
Alignment:
Q  3 cttcaggagcagttcttttcagacgctttaagctt-cctttttgttgat 50  Q
    |||||| ||||||| | |||||||||||||||||| |||||||||||||    
T  65246 cttcagaagcagttttcttcagacgctttaagcttccctttttgttgat 65198  T

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