View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_3 (Length: 544)
Name: NF7323_low_3
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 9 - 527
Target Start/End: Original strand, 39480137 - 39480655
Alignment:
| Q |
9 |
gagatggacatcaaccgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccgcctgcttccttcacagcttgacccttttctgat |
108 |
Q |
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| T |
39480137 |
gagatgaacatcaaccgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccacctgcttccttcacagcttgacccttttctgat |
39480236 |
T |
|
| Q |
109 |
cttccgttgacacctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39480237 |
cttccgttgacacctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccag |
39480336 |
T |
|
| Q |
209 |
agaggtaaaccagctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatgcgaactat |
308 |
Q |
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| T |
39480337 |
agaggtaaaccagctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatgcgaactat |
39480436 |
T |
|
| Q |
309 |
agctgggaattttctgtcaagtgtgcttgctccaatagttgcaatccaaggagcatcattggcaacagacatcgccattgggccattgtttcctgccgca |
408 |
Q |
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| T |
39480437 |
agctgggaattttctgtcaagtgtgcttgctccaatagttgcaatccaaggagcatcattggcaacagacatcgccattgggccattgtttcctgccgca |
39480536 |
T |
|
| Q |
409 |
catataactgaaatccctttctccattgctcgaaagcttccaatggcaatactatcatcatatagtggcaccgggaaaccgcctagagacaaggatagaa |
508 |
Q |
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| T |
39480537 |
catataactgaaatccctttctccattgctcgaaagcttccaatggcaatactatcatcatatagtggcaccgggaaaccacctagagacaaggatagaa |
39480636 |
T |
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| Q |
509 |
cgtccacaccgtctctgat |
527 |
Q |
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| T |
39480637 |
cgtccacaccatctctgat |
39480655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 39127281 - 39126999
Alignment:
| Q |
16 |
acatcaaccgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccgcctgcttccttcacagcttgacccttttctgatcttccgt |
115 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || | |||||| |||||| |||||||||||||||||||||| | |
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| T |
39127281 |
acatcaattgaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctgatcttccat |
39127182 |
T |
|
| Q |
116 |
tgacacctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttgaggcaaaattgactctcactatccccaccagagaggta |
215 |
Q |
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||||||||| ||| |||| ||| |||| ||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| |||||| ||||| |
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| T |
39127181 |
tgacacctcaatcgcatatgaccgttttgccttgaaatttgacctttggaagaga-gtattgaggc-aaattgactctcactatctccaccacttaggta |
39127084 |
T |
|
| Q |
216 |
aaccagctcaagttctttgctattgcttgctattctgttcaccggatacatggattctccatagagaacttgtccattacccatg |
300 |
Q |
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|||| ||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39127083 |
aaccggctcaagttctttgccattgcttgctataatgtttacaagatacatggattctccatagagaacttgtccattatccatg |
39126999 |
T |
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