View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_31 (Length: 229)
Name: NF7323_low_31
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 12803903 - 12804059
Alignment:
| Q |
55 |
atcaagataactttcttgtcaaattgttaaatttgcagttaaaataacagtaacaagagcagtgtttgacatacagcgtgcaattgcaattttcaccaca |
154 |
Q |
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| T |
12803903 |
atcaagataactttcttgtcaaattgttaaatttgcagttaaaataacagtaacaatagcagtgtttgacatacagcgtgcaattgcaattttcaccaca |
12804002 |
T |
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| Q |
155 |
tttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtcca |
211 |
Q |
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| T |
12804003 |
tttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtcca |
12804059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 12741088 - 12741244
Alignment:
| Q |
55 |
atcaagataactttcttgtcaaattgttaaatttgcagttaaaataacagtaacaagagcagtgtttgacatacagcgtgcaattgcaattttcaccaca |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12741088 |
atcaagataactttcttgtcaaattgttaaatttgcagttaaaataacagtaacaatagcagtgtttgacatacagcgtgcaattgcaattttcaccaca |
12741187 |
T |
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| Q |
155 |
tttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtcca |
211 |
Q |
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| T |
12741188 |
tttagcaaaaactttgcctgcatcaggcccttcagtcttagttataacacatgtcca |
12741244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 12733641 - 12733741
Alignment:
| Q |
111 |
gagcagtgtttgacatacagcgtgcaattgcaattttcaccacatttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtcc |
210 |
Q |
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| T |
12733641 |
gagcagtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacatgtcc |
12733740 |
T |
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| Q |
211 |
a |
211 |
Q |
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| T |
12733741 |
a |
12733741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 12796425 - 12796525
Alignment:
| Q |
111 |
gagcagtgtttgacatacagcgtgcaattgcaattttcaccacatttagcaaaaactttgccagcatcaggcccttcagtcttagttataacacatgtcc |
210 |
Q |
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| T |
12796425 |
gagcagtgtgtgacatacagtgtgcaggtgcaattttcaccgcatttaacaaaaactttgccagcatcaggtccagtagtcctagttataacacatgtcc |
12796524 |
T |
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| Q |
211 |
a |
211 |
Q |
| |
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| T |
12796525 |
a |
12796525 |
T |
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