View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7323_low_34 (Length: 212)

Name: NF7323_low_34
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7323_low_34
NF7323_low_34
[»] chr7 (15 HSPs)
chr7 (19-197)||(46973720-46973898)
chr7 (136-183)||(29653639-29653686)
chr7 (130-182)||(41461242-41461294)
chr7 (131-198)||(1569143-1569210)
chr7 (131-190)||(45601611-45601670)
chr7 (138-190)||(12966151-12966203)
chr7 (131-179)||(24549776-24549824)
chr7 (131-190)||(21517468-21517527)
chr7 (131-190)||(28628021-28628080)
chr7 (125-171)||(30144929-30144975)
chr7 (136-190)||(38135306-38135360)
chr7 (131-189)||(43281967-43282025)
chr7 (138-183)||(22174142-22174187)
chr7 (130-183)||(28858187-28858240)
chr7 (131-183)||(30664710-30664762)
[»] chr1 (11 HSPs)
chr1 (130-190)||(8342968-8343028)
chr1 (136-190)||(3818949-3819003)
chr1 (136-190)||(8203227-8203281)
chr1 (136-190)||(19969305-19969359)
chr1 (130-190)||(6025740-6025800)
chr1 (130-190)||(30834064-30834124)
chr1 (131-190)||(40416506-40416565)
chr1 (130-188)||(42501245-42501303)
chr1 (130-171)||(12135861-12135902)
chr1 (130-183)||(12231507-12231560)
chr1 (138-182)||(8796352-8796396)
[»] chr2 (14 HSPs)
chr2 (136-198)||(26784433-26784495)
chr2 (131-190)||(9556457-9556516)
chr2 (139-198)||(38435079-38435138)
chr2 (125-180)||(43832243-43832298)
chr2 (136-190)||(33287556-33287610)
chr2 (136-198)||(33625291-33625357)
chr2 (138-190)||(19235079-19235131)
chr2 (136-184)||(31254429-31254477)
chr2 (137-180)||(23915787-23915830)
chr2 (143-198)||(33504350-33504405)
chr2 (136-174)||(1626346-1626384)
chr2 (136-190)||(12026098-12026152)
chr2 (130-191)||(42092651-42092712)
chr2 (130-174)||(19024329-19024373)
[»] chr8 (14 HSPs)
chr8 (129-190)||(4011218-4011279)
chr8 (131-190)||(35643694-35643753)
chr8 (130-190)||(23023360-23023420)
chr8 (130-190)||(38178347-38178407)
chr8 (131-183)||(39967587-39967639)
chr8 (131-190)||(38391981-38392040)
chr8 (137-183)||(79169-79215)
chr8 (136-198)||(10108940-10109002)
chr8 (136-190)||(16351513-16351567)
chr8 (136-190)||(17491747-17491801)
chr8 (131-176)||(16705896-16705941)
chr8 (138-190)||(9904977-9905029)
chr8 (130-190)||(10079994-10080054)
chr8 (130-189)||(39388918-39388978)
[»] chr3 (9 HSPs)
chr3 (130-183)||(46431766-46431819)
chr3 (136-196)||(2340810-2340870)
chr3 (136-188)||(36820070-36820122)
chr3 (130-190)||(43308697-43308757)
chr3 (131-190)||(19676169-19676228)
chr3 (130-189)||(37598257-37598315)
chr3 (131-190)||(39600769-39600828)
chr3 (136-190)||(11581579-11581633)
chr3 (129-183)||(41452826-41452880)
[»] chr4 (21 HSPs)
chr4 (131-198)||(50680867-50680934)
chr4 (136-190)||(10209171-10209225)
chr4 (140-198)||(37488218-37488276)
chr4 (130-183)||(42639107-42639160)
chr4 (130-183)||(54470349-54470402)
chr4 (130-190)||(47147508-47147568)
chr4 (136-191)||(31961359-31961414)
chr4 (130-181)||(47372795-47372846)
chr4 (136-174)||(7544616-7544654)
chr4 (136-190)||(7682003-7682057)
chr4 (131-181)||(26024938-26024988)
chr4 (136-182)||(42293358-42293404)
chr4 (130-183)||(934518-934571)
chr4 (130-179)||(20047581-20047630)
chr4 (141-190)||(25967359-25967408)
chr4 (131-196)||(28351688-28351753)
chr4 (138-183)||(53517672-53517717)
chr4 (131-171)||(26025007-26025047)
chr4 (136-188)||(34233117-34233169)
chr4 (130-174)||(37042751-37042795)
chr4 (130-174)||(45569096-45569140)
[»] scaffold0018 (1 HSPs)
scaffold0018 (136-190)||(178513-178567)
[»] scaffold0325 (1 HSPs)
scaffold0325 (134-183)||(11939-11988)
[»] chr6 (6 HSPs)
chr6 (130-190)||(33997631-33997691)
chr6 (131-190)||(34593-34652)
chr6 (131-174)||(43140-43183)
chr6 (142-198)||(579545-579601)
chr6 (136-188)||(10617327-10617379)
chr6 (131-183)||(31831947-31831999)
[»] chr5 (11 HSPs)
chr5 (136-190)||(2713079-2713133)
chr5 (136-190)||(10082838-10082892)
chr5 (136-190)||(12576953-12577007)
chr5 (136-190)||(27998576-27998630)
chr5 (129-190)||(2066132-2066193)
chr5 (130-183)||(5303586-5303639)
chr5 (131-183)||(14667913-14667965)
chr5 (130-190)||(14749442-14749502)
chr5 (130-174)||(28186862-28186906)
chr5 (130-190)||(38684615-38684675)
chr5 (131-183)||(43475382-43475433)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 46973898 - 46973720
Alignment:
Q  19 accaaggtcatgcaagtccgacactattattattattaaatacacaatctgctannnnnnngccaagttaaaatcaagcttgaagaaaactatacgacag 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  46973898 accaagttcatgcaagtccgacactattattattattaaatacacaatctgctatttttttgccaagttaaaatcaagcttgaagaaaactatacgacag 46973799  T
Q  119 caatcaatccttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46973798 caatcaatccttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctg 46973720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 29653639 - 29653686
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29653639 actcattaatctctagatctttcttaatagtttctcttacagtttttc 29653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 41461294 - 41461242
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagttttt 182  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  41461294 tatccaactcattaatcactagatctttattaatagtttctcttatagttttt 41461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 1569210 - 1569143
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||| |||||||| ||| ||| ||||||    
T  1569210 atccaactcattaatctctagatctttcttaatagttactcttatagtttttctaggactacctctgc 1569143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45601670 - 45601611
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtct 45601611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 12966203 - 12966151
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  12966203 tcattaatctctaaatatttcttaatagtttctcttatagtttttctaggtct 12966151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 24549776 - 24549824
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtt 179  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||    
T  24549776 atccaactcattaatctctagatctttcttaatagtttctcttatagtt 24549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 21517468 - 21517527
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| ||| ||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  21517468 atccaacttattaatctctaaatattttttaatagtttctcttatagtttttctaggtct 21517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 28628021 - 28628080
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| ||||||||||||||| || |||  ||||||||||||||| |||||||| ||||||    
T  28628021 atccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtct 28628080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 30144975 - 30144929
Alignment:
Q  125 atccttatcccactcattaatctctagatgtttattaatagtttctc 171  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  30144975 atccctatccaactcattaatctctagatctttcttaatagtttctc 30144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 38135306 - 38135360
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||| || ||| |||||||||||||||| | |||||| ||||||    
T  38135306 actcattaatctctaaatcttttttaatagtttctcttatactttttctaggtct 38135360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 43282025 - 43281967
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 189  Q
    |||| |||||||||||||||||| ||  ||||| ||||||||||| ||||||| |||||    
T  43282025 atccaactcattaatctctagatcttacttaattgtttctcttacggtttttctaggtc 43281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 22174187 - 22174142
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||||||||||||||| ||| || ||||||||||||| ||||||||    
T  22174187 tcattaatctctagatctttgtttatagtttctcttatagtttttc 22174142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 28858240 - 28858187
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| ||| |||||||||||||| ||| |||||||||| ||||| ||||||||    
T  28858240 tatccaacttattaatctctagatctttcttaatagtttgtcttatagtttttc 28858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 30664762 - 30664710
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||| ||| ||||    
T  30664762 atccaactcattaatctctagatctttcttaatagtttcttttatagtctttc 30664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 8342968 - 8343028
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||    
T  8342968 tatccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggtct 8343028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 3818949 - 3819003
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||||||||||    
T  3818949 actcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtct 3819003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 8203227 - 8203281
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  8203227 actcattaatctctagatcttttttaatagtttctcttatagtttttctaggtct 8203281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 19969305 - 19969359
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  19969305 actcattaatctctagatctttgttaatagtttctcttatagtttttctaggtct 19969359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 6025800 - 6025740
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||||||||| ||| ||| |||| ||||||| |||||||| ||||||    
T  6025800 tatccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtct 6025740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 30834064 - 30834124
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||| || ||||| ||||||    
T  30834064 tatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtct 30834124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 40416565 - 40416506
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| |||||||||||| ||||| ||| |||||||||| ||||| |||||||| ||||||    
T  40416565 atccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtct 40416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 42501303 - 42501245
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 188  Q
    ||||| |||||||||||| ||||| ||| |||||| ||||||||| |||||||| ||||    
T  42501303 tatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggt 42501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 12135902 - 12135861
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctc 171  Q
    ||||| |||||||||||||||||| ||| |||||||||||||    
T  12135902 tatccaactcattaatctctagatttttcttaatagtttctc 12135861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 12231560 - 12231507
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| ||||||||||||| |||| ||| |||||||| ||||||| ||||||||    
T  12231560 tatccaactcattaatctcgagatctttcttaatagtctctcttatagtttttc 12231507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 8796396 - 8796352
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagttttt 182  Q
    |||||||| ||||||| ||| |||||||||||||||| |||||||    
T  8796396 tcattaatatctagatctttcttaatagtttctcttaaagttttt 8796352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 26784433 - 26784495
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| |||||| |||||||    
T  26784433 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgc 26784495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 9556457 - 9556516
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| ||||||||||| |||||| ||| |||||||||| ||||| |||||||||||||||    
T  9556457 atccaactcattaatcactagatctttcttaatagtttatcttatagtttttcaaggtct 9556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 38435138 - 38435079
Alignment:
Q  139 cattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    ||||||||||||||| ||| |||||||||||||||  |||||||| ||||||| ||||||    
T  38435138 cattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgc 38435079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 43832298 - 43832243
Alignment:
Q  125 atccttatcccactcattaatctctagatgtttattaatagtttctcttacagttt 180  Q
    |||||||||| ||||||||||||||||||  || |||||||||||||||| |||||    
T  43832298 atccttatccaactcattaatctctagatccttcttaatagtttctcttatagttt 43832243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 33287610 - 33287556
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||| ||||||    
T  33287610 actcattaatttctagatctttcttaatagtttctcttatagtttttctaggtct 33287556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 33625291 - 33625357
Alignment:
Q  136 actcattaatctctagatgtttattaatag----tttctcttacagtttttcaaggtctatctctgc 198  Q
    |||||||||||||||||| ||| |||||||    |||||||||||||||||| ||||||| ||||||    
T  33625291 actcattaatctctagatatttcttaatagtttctttctcttacagtttttctaggtctacctctgc 33625357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 19235079 - 19235131
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||| ||||||    
T  19235079 tcattaatctctagatctttctcaatagtttctcttatagtttttctaggtct 19235131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 31254477 - 31254429
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttca 184  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||    
T  31254477 actcattaatctctagatctttcttaatagtttaacttacagtttttca 31254429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 23915787 - 23915830
Alignment:
Q  137 ctcattaatctctagatgtttattaatagtttctcttacagttt 180  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||    
T  23915787 ctcattaatctctagatttttcttaatagtttctcttatagttt 23915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 33504405 - 33504350
Alignment:
Q  143 aatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||| | |||||||    
T  33504405 aatctctagatctttcttaatagtttctcttatagtttttctaggtttttctctgc 33504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 1626384 - 1626346
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctctta 174  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  1626384 actcattaatctctagatctttcttaatagtttctctta 1626346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 12026098 - 12026152
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||||||||| ||| ||||||||||||| || ||||| || ||||||    
T  12026098 actcattaatctctagatctttcttaatagtttctcctatagtttctctaggtct 12026152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 42092712 - 42092651
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 191  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||| || |||||||| |||||||    
T  42092712 tatccaactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtcta 42092651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 19024373 - 19024329
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctctta 174  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||||    
T  19024373 tatccaactcattaatctttagatctttcttaatagtttctctta 19024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 4011279 - 4011218
Alignment:
Q  129 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  4011279 ttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtct 4011218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 35643694 - 35643753
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||| |||||||| ||||||    
T  35643694 atccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtct 35643753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 23023420 - 23023360
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  23023420 tatccaactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 23023360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 38178347 - 38178407
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||| ||||| | ||| |||||||||||||||| |||||||| ||||||    
T  38178347 tatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtct 38178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 39967587 - 39967639
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||| ||||||||||| |||||| ||| |||||||||||||||| ||||||||    
T  39967587 atccaactcattaatcgctagatctttcttaatagtttctcttatagtttttc 39967639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 38391981 - 38392040
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| || |||||||| ||||||    
T  38391981 atcccactcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtct 38392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 79215 - 79169
Alignment:
Q  137 ctcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| ||||    
T  79215 ctcattaatctctagatctttcttaatagtttctcttatagtgtttc 79169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 10109002 - 10108940
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    |||| ||||||||||||| ||| ||| ||||||||||||  ||||||| |||||| |||||||    
T  10109002 actcgttaatctctagatctttcttattagtttctcttatggtttttctaggtctttctctgc 10108940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 16351567 - 16351513
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||||||  || |||||||||||||| | |||||||| ||||||    
T  16351567 actcattaatctctagatccttcttaatagtttctctaatagtttttctaggtct 16351513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 17491747 - 17491801
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||| |  | ||| ||||||||||||||||||||||||| ||||||    
T  17491747 actcattaatctccaagtctttcttaatagtttctcttacagtttttctaggtct 17491801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 16705941 - 16705896
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttaca 176  Q
    |||| |||||||||||||||| | ||| ||||||||||||||||||    
T  16705941 atccaactcattaatctctagctttttcttaatagtttctcttaca 16705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 9904977 - 9905029
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||| |||| || |||||||||||||||||||  |||||||| ||||||    
T  9904977 tcattaatttctaaatctttattaatagtttctcttgtagtttttctaggtct 9905029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 10079994 - 10080054
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||||||||| ||| |||| ||||| ||||| ||||| || ||||||    
T  10079994 tatccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtct 10080054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 39388978 - 39388918
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctc-ttacagtttttcaaggtc 189  Q
    ||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||| |||||    
T  39388978 tatccaactcattaatctctagatctttcctaatagtttctctttatagtttttctaggtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 46431766 - 46431819
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  46431766 tatccaactcattaatctctagatcttttttaatagtttctcttatagtttttc 46431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 2340810 - 2340870
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctct 196  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||| | |||||| |||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctttctct 2340870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 36820070 - 36820122
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 188  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  36820070 actcattaatctctagatctttcttaatagtttctcttatagtttttctaggt 36820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 43308757 - 43308697
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| ||| |||||||||||||| ||| |||||||||||||||  |||||||| ||||||    
T  43308757 tatccaactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggtct 43308697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 19676169 - 19676228
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| ||||||||| ||||| || |||  |||||||||||||||||||||||| ||||||    
T  19676169 atccaactcattaacctctaaatttttcctaatagtttctcttacagtttttctaggtct 19676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 37598257 - 37598315
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 189  Q
    ||||| |||||||||||||||||| | | |||||||||||||||| |||||||| |||||    
T  37598257 tatccaactcattaatctctagatatatcttaatagtttctctta-agtttttctaggtc 37598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 39600769 - 39600828
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| ||||||||| ||||| || ||| |||||||||||||||| |||||||| ||||||    
T  39600769 atccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtct 39600828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 11581633 - 11581579
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||| |||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  11581633 actcatttatctatagatctttcttaatagtttctcttatagtttttctaggtct 11581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 41452826 - 41452880
Alignment:
Q  129 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||||| |||||||||||||||||| ||| ||||||||||  |||| ||||||||    
T  41452826 ttatccaactcattaatctctagatctttcttaatagtttaacttatagtttttc 41452880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 50680934 - 50680867
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    |||| |||||||||||||||||| ||| | |||| ||||||||| |||||||| ||||||| ||||||    
T  50680934 atccaactcattaatctctagatctttctaaataatttctcttatagtttttctaggtctacctctgc 50680867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 10209225 - 10209171
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||| ||||||    
T  10209225 actcattaatctctagatccttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 37488276 - 37488218
Alignment:
Q  140 attaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| ||||||| ||||||    
T  37488276 attaatttctagatctttcttaatagtttctcttatagtttttctaggtctacctctgc 37488218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 42639107 - 42639160
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  42639107 tatccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttc 42639160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 54470402 - 54470349
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||| ||||||||    
T  54470402 tatccaactcattaatctctagaactttattaatagattctcttatagtttttc 54470349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 47147568 - 47147508
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||||||||||||||||| ||| ||||||||||||  || |||||||| ||||||    
T  47147568 tatccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtct 47147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 31961359 - 31961414
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 191  Q
    ||||||| |||||||||| |||  ||||||||||||||| |||||||| |||||||    
T  31961359 actcatttatctctagatctttcctaatagtttctcttatagtttttctaggtcta 31961414  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 47372846 - 47372795
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttt 181  Q
    ||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||    
T  47372846 tatccaactcattaatctctggatctttattagtagtttctcttatagtttt 47372795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 7544616 - 7544654
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctctta 174  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  7544616 actcattaatctctagatctttcttaatagtttctctta 7544654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 7682003 - 7682057
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||| ||||| ||| || ||||||||||||| |||||||| ||||||    
T  7682003 actcattaatctatagatttttcttgatagtttctcttatagtttttccaggtct 7682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 26024938 - 26024988
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttt 181  Q
    |||| |||||||||||||||||| ||| ||||||||||||| || ||||||    
T  26024938 atccaactcattaatctctagatctttcttaatagtttctcatatagtttt 26024988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 42293358 - 42293404
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagttttt 182  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||    
T  42293358 actcattaatttctagatctttcttaatagtttctcttatagttttt 42293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 934518 - 934571
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| |||||||||||||||||  ||| |||||||||||||| | ||||||||    
T  934518 tatccaactcattaatctctagaactttcttaatagtttctctaatagtttttc 934571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20047630 - 20047581
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtt 179  Q
    ||||| |||||||||||||||||| ||  |||||||||||||||| ||||    
T  20047630 tatccaactcattaatctctagatcttctttaatagtttctcttatagtt 20047581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 25967359 - 25967408
Alignment:
Q  141 ttaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||| ||| |||||||||||||||| |||| ||||| ||||    
T  25967359 ttaatctctagatcttttttaatagtttctcttatagttattcaaagtct 25967408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 28351753 - 28351688
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctct 196  Q
    |||| ||||| ||||||||| || |||  ||||||||||||||| |||||||| |||||| |||||    
T  28351753 atccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttctaggtctttctct 28351688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 53517717 - 53517672
Alignment:
Q  138 tcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||||||||||||| | ||| || ||||||||||||||||||||||    
T  53517717 tcattaatctctagttcttttttgatagtttctcttacagtttttc 53517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 26025007 - 26025047
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctc 171  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  26025007 atccaactcattaatctctagatctttcttaatagtttctc 26025047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 34233117 - 34233169
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 188  Q
    |||||||||||||||| | ||||| |||||||||||| | |||||||| ||||    
T  34233117 actcattaatctctaggtctttatgaatagtttctctgatagtttttctaggt 34233169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 37042751 - 37042795
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctctta 174  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||||||    
T  37042751 tatccaactcaataatctctagatctttcttaatagtttctctta 37042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 45569096 - 45569140
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctctta 174  Q
    ||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  45569096 tatccaactcattgatctctagatttttcttaatagtttctctta 45569140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 178513 - 178567
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  178513 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtct 178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 11988 - 11939
Alignment:
Q  134 ccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  11988 ccactcattaatctctagatccttcttaatagtttctcttatagtttttc 11939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 33997631 - 33997691
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| ||||||||||||||||   ||| |||||||||||||||| |||||| ||||||||    
T  33997631 tatccaactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtct 33997691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 34593 - 34652
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||| |||||||||||| ||||| ||| ||||| |||||||||| |||||||| ||||||    
T  34593 atccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtct 34652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 43140 - 43183
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctctta 174  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||    
T  43140 atccaactcattactctctagatctttattaatagtttctctta 43183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 579601 - 579545
Alignment:
Q  142 taatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 198  Q
    |||| |||| || ||| ||||||||||||||||||||||||  |||||| |||||||    
T  579601 taatttctatatctttcttaatagtttctcttacagttttttgaggtctttctctgc 579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 10617327 - 10617379
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 188  Q
    ||||||||||||||||||  || ||||| |||||||||| |||||||| ||||    
T  10617327 actcattaatctctagatccttcttaatggtttctcttatagtttttctaggt 10617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 31831947 - 31831999
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||| ||||| |||||||||||| ||| |||||||||||||| | ||||||||    
T  31831947 atccaactcagtaatctctagatctttcttaatagtttctctgatagtttttc 31831999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 2713133 - 2713079
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||| ||||||||||  || |||||||||||||||| |||||||| ||||||    
T  2713133 actcattcatctctagatccttcttaatagtttctcttatagtttttctaggtct 2713079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 10082838 - 10082892
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||||||||||||||||  || ||| |||||||||||| |||||||| ||||||    
T  10082838 actcattaatctctagatccttgttactagtttctcttatagtttttctaggtct 10082892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 12576953 - 12577007
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||||||||| ||| |||||||||| ||||  |||||||| ||||||    
T  12576953 actcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtct 12577007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 27998630 - 27998576
Alignment:
Q  136 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  27998630 actcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 27998576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 2066193 - 2066132
Alignment:
Q  129 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    |||||| |||||||||||||||||| ||| ||| |||||||| ||| | |||||| ||||||    
T  2066193 ttatccaactcattaatctctagatcttttttagtagtttcttttataatttttctaggtct 2066132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 5303639 - 5303586
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    ||||| ||||||||| ||||| || ||| | |||||||||||||||||||||||    
T  5303639 tatccaactcattaaactctaaatctttttcaatagtttctcttacagtttttc 5303586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 14667965 - 14667913
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||| |||||||||||||||||| ||| ||| ||| |||||||| ||||||||    
T  14667965 atccaactcattaatctctagatctttcttagtagcttctcttatagtttttc 14667913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 14749502 - 14749442
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| |||| |||||||||||||  || || ||||||||||||| |||||||| ||||||    
T  14749502 tatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtct 14749442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 28186862 - 28186906
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctctta 174  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||||    
T  28186862 tatccaactcattaatctctaaatctttcttaatagtttctctta 28186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 38684675 - 38684615
Alignment:
Q  130 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 190  Q
    ||||| ||| |||||||||||||| ||| |||| ||||||||||  |||||||| ||||||    
T  38684675 tatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtct 38684615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 43475433 - 43475382
Alignment:
Q  131 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 183  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  43475433 atccaactcattaatctctggatctttcttaatagtttctctta-agtttttc 43475382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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