View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_36 (Length: 201)
Name: NF7323_low_36
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 1047293 - 1047111
Alignment:
| Q |
4 |
atcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaataagttattgaa |
103 |
Q |
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| T |
1047293 |
atcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaataagttattgaa |
1047194 |
T |
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| Q |
104 |
acattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaactacaacagttgatgt |
186 |
Q |
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| T |
1047193 |
acattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgt |
1047111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 1072103 - 1071951
Alignment:
| Q |
7 |
ttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaataagttattgaaaca |
106 |
Q |
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| T |
1072103 |
ttttggtactgactgaatatcgctccaagtgttgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaataagttattgaaacc |
1072004 |
T |
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| Q |
107 |
ttactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
159 |
Q |
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| T |
1072003 |
atactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcac |
1071951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 1087767 - 1087612
Alignment:
| Q |
4 |
atcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaataagttattgaa |
103 |
Q |
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| T |
1087767 |
atcttttggcaacgactcaataacactccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaataagttattgaa |
1087668 |
T |
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| Q |
104 |
acattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
159 |
Q |
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| T |
1087667 |
acattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcac |
1087612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 1104244 - 1104165
Alignment:
| Q |
80 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcac |
159 |
Q |
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| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcac |
1104165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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