View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7323_low_5 (Length: 499)

Name: NF7323_low_5
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7323_low_5
NF7323_low_5
[»] chr5 (6 HSPs)
chr5 (232-480)||(1587487-1587735)
chr5 (113-208)||(1588267-1588362)
chr5 (398-480)||(1590654-1590736)
chr5 (242-460)||(1581034-1581243)
chr5 (242-460)||(1603572-1603781)
chr5 (19-86)||(1588389-1588456)
[»] chr3 (3 HSPs)
chr3 (232-476)||(19270050-19270294)
chr3 (113-165)||(19268279-19268331)
chr3 (32-86)||(19268198-19268252)
[»] chr7 (2 HSPs)
chr7 (113-199)||(39614941-39615029)
chr7 (415-477)||(39615906-39615968)
[»] chr8 (1 HSPs)
chr8 (17-73)||(8152870-8152926)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 232 - 480
Target Start/End: Complemental strand, 1587735 - 1587487
Alignment:
Q  232 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 331  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587735 ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 1587636  T
Q  332 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1587635 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca 1587536  T
Q  432 acacgatcacttctaaaccaaccggtttatcactttcatccttttctat 480  Q
    ||||  |||||||||||||| || |||||| ||||||||||||||||||    
T  1587535 acacagtcacttctaaaccatcctgtttattactttcatccttttctat 1587487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 1588362 - 1588267
Alignment:
Q  113 ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1588362 ggaccaacatgatcaaggagaataatctagtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact 1588267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 1590654 - 1590736
Alignment:
Q  398 aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctat 480  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1590654 aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctat 1590736  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 460
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
Q  242 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 341  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1581243 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1581144  T
Q  342 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 440  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1581143 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1581054  T
Q  441 cttctaaaccaaccggttta 460  Q
    |||||| ||||||| |||||    
T  1581053 cttctataccaaccagttta 1581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 460
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
Q  242 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 341  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1603572 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1603671  T
Q  342 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 440  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1603672 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1603761  T
Q  441 cttctaaaccaaccggttta 460  Q
    |||||| ||||||| |||||    
T  1603762 cttctataccaaccagttta 1603781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1588456 - 1588389
Alignment:
Q  19 atcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt 86  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1588456 atcaaaatcatcataagcagtagaattcagaccccataaagcaattaaagcttatcttcaagcaattt 1588389  T

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Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 232 - 476
Target Start/End: Original strand, 19270050 - 19270294
Alignment:
Q  232 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 331  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  19270050 ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg 19270149  T
Q  332 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 431  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19270150 ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca 19270249  T
Q  432 acacgatcacttctaaaccaaccggtttatcactttcatcctttt 476  Q
    |||| ||||||||||||||||| ||||| | | ||||||||||||    
T  19270250 acacaatcacttctaaaccaactggtttgttattttcatcctttt 19270294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 19268279 - 19268331
Alignment:
Q  113 ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaa 165  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  19268279 ggaccaacatgatcaaggagaataatctagtcatttaaggtgtcatagtcaaa 19268331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 19268198 - 19268252
Alignment:
Q  32 taagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt 86  Q
    ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  19268198 taagcagtagaattcaaaccctataaagcaatcaaagcttattttcaagcaattt 19268252  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 39614941 - 39615029
Alignment:
Q  113 ggaccaacatgatcaaggagaataatctag--tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca 199  Q
    ||||||||||||||||||| |||||| |||  |||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  39614941 ggaccaacatgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca 39615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 39615906 - 39615968
Alignment:
Q  415 tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc 477  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  39615906 tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttc 39615968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 8152926 - 8152870
Alignment:
Q  17 acatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttat 73  Q
    |||||||||||||||||||||||| |||| || | |||||||| ||| |||||||||    
T  8152926 acatcaaaatcatcataagcagtataattaaacctccataaagtaatcaaagcttat 8152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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