View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_6 (Length: 441)
Name: NF7323_low_6
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 1890808 - 1890474
Alignment:
| Q |
1 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890808 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccac |
1890709 |
T |
|
| Q |
101 |
aggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890708 |
aggtggcaaaacatccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagt |
1890609 |
T |
|
| Q |
201 |
tcagaatttctgtgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattattt |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890608 |
tcagaatttctatgagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattattt |
1890509 |
T |
|
| Q |
301 |
aagaaactgtttatatactcccattgtactttgct |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
1890508 |
aagaaactgtttatatactcccattgtactttgct |
1890474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 1895653 - 1895517
Alignment:
| Q |
6 |
gcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtg |
105 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
106 |
gcaaaacatccttgtaaaatgaccatcttcttgtcat |
142 |
Q |
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||||||||||| ||||||| ||||||||||||||||| |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1911114 - 1910928
Alignment:
| Q |
1 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccac |
100 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||| ||||| | |
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| T |
1911114 |
cataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagc |
1911015 |
T |
|
| Q |
101 |
aggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
188 |
Q |
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|||||||| ||||||| |||| || ||||||||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||| |
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| T |
1911014 |
aggtggcagaacatccatgtacaaggaccatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 1884164 - 1883959
Alignment:
| Q |
1 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| || |
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| T |
1884164 |
cataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaac |
1884065 |
T |
|
| Q |
101 |
aggtggcaaaacatccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagt |
200 |
Q |
| |
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|||||||| || |||| ||||||| |||| | |||||||||| ||||| || ||||||||| |||| || |||||||||||||| || |||||| |
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| T |
1884064 |
aggtggcagaaaatccatgtaaaaggaccgttttcttgtcat-ctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagt |
1883966 |
T |
|
| Q |
201 |
tcagaat |
207 |
Q |
| |
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||||||| |
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|
| T |
1883965 |
tcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 1902069 - 1901928
Alignment:
| Q |
1 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccac |
100 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| |||||||| |
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| T |
1902069 |
cataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccac |
1901970 |
T |
|
| Q |
101 |
aggtggcaaaacatccttgtaaaatgaccatcttcttgtcat |
142 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||| |
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| T |
1901969 |
aggtggcaaaacatccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1878152 - 1878084
Alignment:
| Q |
1 |
cataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
69 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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|
| T |
1878152 |
cataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
1878084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
21 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
70 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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