View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7323_low_9 (Length: 418)
Name: NF7323_low_9
Description: NF7323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7323_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 17740455 - 17740866
Alignment:
| Q |
1 |
tcattaacatatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattattactacataattgtcatcttatccggagt |
100 |
Q |
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| T |
17740455 |
tcattaacatatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattat-actacataattgtcatcttatccggagt |
17740553 |
T |
|
| Q |
101 |
agtgaatctacaacgactgtcggatcccggagttgcttgaagacaatggaggatggcattgctacttcgagaggggctgtgttcgtgctaggactctaat |
200 |
Q |
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| T |
17740554 |
agtgaatctacaacgactgtcggatcccgaagttgcttgaagacaatggaggatggcattgctacttcgagaggggctatgttcgtgctaggactctaat |
17740653 |
T |
|
| Q |
201 |
gctcaagtaaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtg |
300 |
Q |
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| T |
17740654 |
gctcaagtaaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtg |
17740753 |
T |
|
| Q |
301 |
tgagttaattagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgaca-gacccataaactcaatgtcataaggattttggtaaat |
399 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
17740754 |
tgag----ttagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgacaggacccagaaactcaatgtcataaggattttggtaaac |
17740849 |
T |
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| Q |
400 |
atgtgatgtccatctca |
416 |
Q |
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| T |
17740850 |
atgtgacgtccaactca |
17740866 |
T |
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