View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7324_high_1 (Length: 649)
Name: NF7324_high_1
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7324_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 21 - 633
Target Start/End: Complemental strand, 39510536 - 39509924
Alignment:
| Q |
21 |
gttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagtt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39510536 |
gttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgaaaattccgaatggttgccaattccagctgccagaggagggagtt |
39510437 |
T |
|
| Q |
121 |
ctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattgaaaatccccttgcttgatcttcaatttgcaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39510436 |
ctcacagcagattaactgatgcaacagcaattcaaggctcccctttacctaacataaacctcggattgaaaatccccttgcttgatcttcaattcgcaac |
39510337 |
T |
|
| Q |
221 |
tgataatttcaatgtgaagaggataattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaagt |
320 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39510336 |
ggataactttgatgcaaagaggataattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaagt |
39510237 |
T |
|
| Q |
321 |
gagccagggtcaggtcaaggactgcctgaatttcaaactgagataatggttttgtcaaagattcgtcatcggcaccttgtttccttaattgggtattgtg |
420 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39510236 |
gagccagggtcaggtcaaggactacctgaatttcagactgagataatggttttgtcaaagattcgtcatcgacaccttgtttccttaattgggtattgtg |
39510137 |
T |
|
| Q |
421 |
atgaaaggtatgagatgatacttgtttatgagtacatggaaaatgggacacttagagatagtctgtacagtgcaaatttgcctagtttcttgacttggaa |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39510136 |
atgaaaggtatgagatgatacttgtttatgagtacatggaaaaggggacacttaaagaaagtttgtaaggtgcaaatttgcctagtttcttgacttggaa |
39510037 |
T |
|
| Q |
521 |
gcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccacaaac |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||| |
|
|
| T |
39510036 |
gcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagcagctggtggaatcattcaccgcgatgtgaagtccactaac |
39509937 |
T |
|
| Q |
621 |
atattgcttgatg |
633 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39509936 |
atattgcttgatg |
39509924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 39520796 - 39520340
Alignment:
| Q |
19 |
ctgttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39520796 |
ctgttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggag |
39520697 |
T |
|
| Q |
119 |
ttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattgaaaatccccttgcttgatcttcaatttgca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39520696 |
ttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgca |
39520597 |
T |
|
| Q |
219 |
actgataatttcaatgtgaagaggataattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaa |
318 |
Q |
| |
|
|| ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
39520596 |
acggataatttcgatgcaaagaggattattggaaagggtggttttggaattgtttataagggagtcctcacgaatggagttagtgttgcagtgaaaagaa |
39520497 |
T |
|
| Q |
319 |
gtgagccagggtcaggtcaaggactgcctgaatttcaaactgagataatggttttgtcaaagattcgtcatcggcaccttgtttccttaattgggtattg |
418 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39520496 |
gtgagccaggatcaggtcaaggtctgcctgaatttcagactgagataatggttttgtccaagattcgtcatcggcatcttgtttccttaattgggtattg |
39520397 |
T |
|
| Q |
419 |
tgatgaaaggtatgagatgatacttgtttatgagtacatggaaaatgggacacttag |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39520396 |
tgatgaaaggtatgagatgatacttgtttatgagtacatggaaaaggggacacttag |
39520340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 19 - 631
Target Start/End: Complemental strand, 39575435 - 39574826
Alignment:
| Q |
19 |
ctgttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggag |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||| |||||| |||| |||||||| |
|
|
| T |
39575435 |
ctgttgttgtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggat |
39575336 |
T |
|
| Q |
119 |
ttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattgaaaatccccttgcttgatcttcaatttgca |
218 |
Q |
| |
|
|||||| |||| ||||||| ||| || ||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| | || |
|
|
| T |
39575335 |
ttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatgaaaatctccttgcttgaccttcaaatcgcc |
39575236 |
T |
|
| Q |
219 |
actgataatttcaatgtgaagaggataattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaa |
318 |
Q |
| |
|
|| || ||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| | | ||| ||||||||||||| |
|
|
| T |
39575235 |
accgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctcaagaatggaatgaatgtggcagtgaaaagaa |
39575136 |
T |
|
| Q |
319 |
gtgagccagggtcaggtcaaggactgcctgaatttcaaactgagataatggttttgtcaaagattcgtcatcggcaccttgtttccttaattgggtattg |
418 |
Q |
| |
|
| | |||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
39575135 |
gcgtgccaggttcaggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattg |
39575036 |
T |
|
| Q |
419 |
tgatgaaaggtatgagatgatacttgtttatgagtacatggaaaatgggacacttagagatagtctgtacagtgcaaatttgcctagtttcttgacttgg |
518 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| | ||||||||||| || ||||||||| |
|
|
| T |
39575035 |
tgatgaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagataatttgtacgatacaaatttgccttgt---ttgacttgg |
39574939 |
T |
|
| Q |
519 |
aagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccacaa |
618 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||| || || ||||| ||||| |||||||| | |
|
|
| T |
39574938 |
aagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccacta |
39574839 |
T |
|
| Q |
619 |
acatattgcttga |
631 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
39574838 |
atatattgcttga |
39574826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 633
Target Start/End: Complemental strand, 39579971 - 39579357
Alignment:
| Q |
19 |
ctgttgtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggag |
118 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||| | | || |||||| |||||||| |
|
|
| T |
39579971 |
ctgttgtggtggttgtgtttttttggattagtaaaatcaggaaacaaaggcctgtggagaattccggttttttggcgactcaagctgctgcaggagggat |
39579872 |
T |
|
| Q |
119 |
ttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattgaaaatccccttgcttgatcttcaatttgca |
218 |
Q |
| |
|
|| | || |||||||| ||| || ||||| ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
39579871 |
atcccttagaagattaacatatggaaaaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgca |
39579772 |
T |
|
| Q |
219 |
actgataatttcaatgtgaagaggataattggaaagggtggttttggaattgtttataagggagttctcaggaatggagttagtgttgcagtgaaaagaa |
318 |
Q |
| |
|
|| || ||||| ||| | | |||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
39579771 |
acagagaattttgatgcggataggataatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatggaatgagtgtagcagtgaaaagaa |
39579672 |
T |
|
| Q |
319 |
gtgagccagggtcaggtcaaggactgcctgaatttcaaactgagataatggttttgtcaaagattcgtcatcggcaccttgtttccttaattgggtattg |
418 |
Q |
| |
|
| | ||| ||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39579671 |
gggtgccggggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattg |
39579572 |
T |
|
| Q |
419 |
tgatgaaaggtatgagatgatacttgtttatgagtacatggaaaatgggacacttagagatagtctgtacagtgcaaatttgcctagtttcttgacttgg |
518 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||||||| |||||||||| ||| | | |||||| | || |||||||||||| ||||||||| |
|
|
| T |
39579571 |
tgatgaagggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttgg |
39579472 |
T |
|
| Q |
519 |
aagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtggtatcattcaccgcgatgtaaaatccacaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||| || || ||||| ||||| |||||||| | |
|
|
| T |
39579471 |
aagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccacta |
39579372 |
T |
|
| Q |
619 |
acatattgcttgatg |
633 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
39579371 |
atatattgcttgatg |
39579357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 89 - 633
Target Start/End: Complemental strand, 39543530 - 39542989
Alignment:
| Q |
89 |
gttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattg |
188 |
Q |
| |
|
|||||| |||||| |||| ||||| || |||||| |||| ||||||| ||| || ||||| ||||||||||||||||||||||||||| ||||| || |
|
|
| T |
39543530 |
gttgccgattccaactgctgcaggagagatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatg |
39543431 |
T |
|
| Q |
189 |
aaaatccccttgcttgatcttcaatttgcaactgataatttcaatgtgaagaggataattggaaagggtggttttggaattgtttataagggagttctca |
288 |
Q |
| |
|
|||||| |||||||||| |||||| | || || || ||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39543430 |
aaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctca |
39543331 |
T |
|
| Q |
289 |
ggaatggagttagtgttgcagtgaaaagaagtgagccagggtcaggtcaaggactgcctgaatttcaaactgagataatggttttgtcaaagattcgtca |
388 |
Q |
| |
|
||||||| | | ||| |||||||||||||||| ||| || ||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
39543330 |
agaatggaatgaatgtggcagtgaaaagaagtgtgccgggttcaggtcaaggacaacatgaatttcaaactgagataatggttctgtccaagattcgtca |
39543231 |
T |
|
| Q |
389 |
tcggcaccttgtttccttaattgggtattgtgatgaaaggtatgagatgatacttgtttatgagtacatggaaaatgggacacttagagatagtctgtac |
488 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || | | | ||| |
|
|
| T |
39543230 |
caaacaccttgtttccttaatagggtattgtgatgaaaggtgtgagatgatacttgtttatgagtacatggaaaatggtacacttagggagaatttatac |
39543131 |
T |
|
| Q |
489 |
agtgcaaatttgcctagtttcttgacttggaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcacaaaggggcagctggtg |
588 |
Q |
| |
|
| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
39543130 |
aatacaaatttgccttgt---ttgacttggaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagctggtg |
39543034 |
T |
|
| Q |
589 |
gtatcattcaccgcgatgtaaaatccacaaacatattgcttgatg |
633 |
Q |
| |
|
| || |||||||| || || |||||||| || ||||||||||||| |
|
|
| T |
39543033 |
gaataattcaccgtgacgtgaaatccactaatatattgcttgatg |
39542989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 39524276 - 39524092
Alignment:
| Q |
24 |
gtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
39524276 |
gtggtggttttgtttctttggattagtaaaatcaggaaacaaaggcctgttgagaagtccgaatggttgcctattccagctgccagaggaggaagttctc |
39524177 |
T |
|
| Q |
124 |
acagcagattaactgatgcaacaacaattcaaggctcacctttacctaacataaatcttggattgaaaatccccttgcttgatct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
39524176 |
acagcagattaactgatgcaacaacaattcaaggctcgcctttacctaacataaaccttggattgaaaatccctttgcttgatct |
39524092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 35904726 - 35904669
Alignment:
| Q |
516 |
tggaagcaaaggcttgagatttgtattggtgctgcaagaggtcttcaataccttcaca |
573 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
35904726 |
tggaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
35904669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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