View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7324_low_2 (Length: 419)
Name: NF7324_low_2
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7324_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 119 - 401
Target Start/End: Complemental strand, 43716544 - 43716263
Alignment:
| Q |
119 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaa-gctagagatgaatcagtgtct |
217 |
Q |
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| T |
43716544 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaaagctagagatgaatcagtgtct |
43716445 |
T |
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| Q |
218 |
cccagtaaacctgaagataagtctttattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
317 |
Q |
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| T |
43716444 |
cccagtaaacctgaagataagtct--attcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
43716347 |
T |
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| Q |
318 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaac |
401 |
Q |
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| T |
43716346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaac |
43716263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 43716611 - 43716542
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttc |
82 |
Q |
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| T |
43716611 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattgatttc |
43716542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 6814765 - 6814847
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatgg |
95 |
Q |
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| T |
6814765 |
aatatctctggatatgtggagtctttggccagtgatgatggaagcattggcagattgggcaatcgatttttttccaagtatgg |
6814847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 52887245 - 52887439
Alignment:
| Q |
13 |
aatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatggctctcaaatacatctga |
112 |
Q |
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| T |
52887245 |
aatatcactggacatgtggaacctttggccattgatgatggaagcactatcagattgggctattgatttcttttcaagtatggctctcaactacatttga |
52887344 |
T |
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| Q |
113 |
ctacaattcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttc-tttttatatgttaataacatagaaagctagagatgaatca |
211 |
Q |
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| T |
52887345 |
ttgcaatt-atctcaactta---tctttgccttccaaaagttcagtac-tttggacttcttttttacttgttaataacttagacagctagagatgaatca |
52887439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 52890957 - 52891029
Alignment:
| Q |
243 |
tattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttat |
315 |
Q |
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| T |
52890957 |
tattcaaaaacatggaatatctgtcaaatattttcctggttgctctgacatttaagttaatataagtctttat |
52891029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 52891238 - 52891300
Alignment:
| Q |
318 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattat |
380 |
Q |
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| T |
52891238 |
attttctacatatttacttgattagtttattctgcagatattatggttcctttggacaattat |
52891300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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