View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7324_low_3 (Length: 406)
Name: NF7324_low_3
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7324_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 42393185 - 42392805
Alignment:
| Q |
19 |
gtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttgggtactatattcactctt |
118 |
Q |
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| T |
42393185 |
gtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttggatactatattcactatt |
42393086 |
T |
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| Q |
119 |
catattacaatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatattgttaaga |
218 |
Q |
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| T |
42393085 |
catattaccatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttgaaaattgttcaaaacttcaatgttgttaaga |
42392986 |
T |
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| Q |
219 |
atagcaattcaatgagcttctacttacggagagcaccatttatcattgctggagtttttaacaattttcaagtatttgtctgacatacaccatatgagac |
318 |
Q |
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| T |
42392985 |
atagcaattcaacgagcttctacttacggagagcaccattgatcattgctagagtttttaacaattttcaagtatttgtctaacatacaccatatgagac |
42392886 |
T |
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| Q |
319 |
acttctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcagcactcaatgctagtattatct |
399 |
Q |
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| T |
42392885 |
acttctctaccctagaaaccacctatcatatgaatattgatcaagggaatctagattcagcgctcaatgctagtataatct |
42392805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 42376627 - 42376447
Alignment:
| Q |
25 |
ttctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataaatagatttgggtactatattcactcttcatatt |
124 |
Q |
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|||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| | | || |||||||||| |||||||| |
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| T |
42376627 |
ttctaaaaaagaagacacctctgcttgccatacccacaccacgactgtcaaatccagatctttataaatagaatcgaatattatattcactattcatatt |
42376528 |
T |
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| Q |
125 |
acaatatagggtaattgatagggagggaaagtgtcgtgtgtattctatgattgttgatgcttg-aaaattgttcaaaacttcaat |
208 |
Q |
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| T |
42376527 |
atcatata-agcaattggtaggttgggaaagt---gtgtgtattctacgattgttgatgcttgtaaaattgttcaaaacttcaat |
42376447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 42387029 - 42386957
Alignment:
| Q |
19 |
gtatcattctcaaaaagaagacacctttgcttgccatacctacaccacgactgtccaatccagatctttataa |
91 |
Q |
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||||| |||| ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
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| T |
42387029 |
gtatcgttctaaaaaagaagacgcctttgcttgccatacccacaacacgactgtctaatccagatctttataa |
42386957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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