View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7324_low_4 (Length: 320)

Name: NF7324_low_4
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7324_low_4
NF7324_low_4
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-287)||(76491-76781)


Alignment Details
Target: scaffold0035 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 76491 - 76781
Alignment:
Q  1 gcgccatcgacagtgaaacattcaagacaaagattcctgtcattacgtacgatgatgttcaaccagagattcagcgtatcgccaatggtgatcgctctcc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76491 gcgccatcgaccgtgaaacattcaagacaaagattcctgtcatcacgtacgatgatgttcaaccagagattcagcgtatcgccaatggtgatcgctctcc 76590  T
Q  101 aattctctctgctcatcccatctctgaattcctaacaaggtacccaannnnnnnnnnnnnnnnnggtggtggttggtgtttgaac--acct--tatatat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                  |||||||| || ||||||||  ||||  |||||||    
T  76591 aattctctctgctcatcccatctctgaattcctaacaaggtacccaattttttcatcttttttttgtggtggtcggggtttgaacagaccttatatatat 76690  T
Q  197 attacgcattgtctttgaccgaccaattttttcttcttttgtttagtcgttaattggtctaaaattttatctaaaacttcttttgacctac 287  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76691 attacgcattgtctttgacggaccaattttttcttcttttctttagtcgttaattggtctaaaattttatctaaaacttcttttgacctac 76781  T

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