View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7324_low_5 (Length: 261)
Name: NF7324_low_5
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7324_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2494752 - 2494650
Alignment:
| Q |
1 |
gacatcaccaacagcaacaccaaccgacccaacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccacca |
100 |
Q |
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| T |
2494752 |
gacatcaccaacagcaacaccaaccgacccaacatccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccacca |
2494653 |
T |
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| Q |
101 |
ctc |
103 |
Q |
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||| |
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| T |
2494652 |
ctc |
2494650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 2494587 - 2494506
Alignment:
| Q |
169 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttctt |
250 |
Q |
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| T |
2494587 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttctt |
2494506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 24181175 - 24181229
Alignment:
| Q |
41 |
aaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagc |
95 |
Q |
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| T |
24181175 |
aaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgagccacaagagc |
24181229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 14021876 - 14021837
Alignment:
| Q |
39 |
taaaatgtgctgcttgtggctgccaccgtaacttccaccg |
78 |
Q |
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| T |
14021876 |
taaaatgtgctgcttgtaactgccaccgtaacttccaccg |
14021837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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