View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7324_low_8 (Length: 213)

Name: NF7324_low_8
Description: NF7324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7324_low_8
NF7324_low_8
[»] chr3 (15 HSPs)
chr3 (7-213)||(4170915-4171121)
chr3 (57-210)||(50518796-50518947)
chr3 (55-206)||(14194152-14194300)
chr3 (7-163)||(37123551-37123708)
chr3 (166-208)||(14893260-14893302)
chr3 (141-206)||(41039462-41039527)
chr3 (38-207)||(25647888-25648054)
chr3 (170-212)||(32010121-32010163)
chr3 (167-208)||(28937431-28937472)
chr3 (104-156)||(46358167-46358219)
chr3 (142-213)||(14280253-14280323)
chr3 (169-212)||(25594213-25594256)
chr3 (57-127)||(28937502-28937574)
chr3 (170-207)||(46358092-46358129)
chr3 (184-213)||(47946049-47946078)
[»] chr2 (12 HSPs)
chr2 (7-208)||(7696133-7696333)
chr2 (81-213)||(4974990-4975122)
chr2 (81-213)||(4992898-4993030)
chr2 (25-213)||(13337449-13337627)
chr2 (8-144)||(12342992-12343126)
chr2 (104-212)||(37770355-37770461)
chr2 (170-212)||(10173284-10173326)
chr2 (179-213)||(22884818-22884852)
chr2 (78-208)||(34230445-34230573)
chr2 (167-209)||(41086512-41086554)
chr2 (169-213)||(4472276-4472320)
chr2 (167-199)||(33533468-33533500)
[»] chr4 (13 HSPs)
chr4 (7-202)||(38636948-38637143)
chr4 (6-209)||(41117676-41117878)
chr4 (7-155)||(49528243-49528390)
chr4 (7-162)||(25753343-25753499)
chr4 (7-205)||(16832732-16832931)
chr4 (54-127)||(22810950-22811023)
chr4 (169-207)||(28967208-28967246)
chr4 (7-114)||(19673271-19673377)
chr4 (7-114)||(19815024-19815130)
chr4 (176-211)||(43077307-43077342)
chr4 (167-208)||(25754206-25754247)
chr4 (169-210)||(39420743-39420784)
chr4 (175-207)||(48098645-48098677)
[»] chr7 (9 HSPs)
chr7 (7-195)||(24324520-24324707)
chr7 (141-213)||(42532963-42533035)
chr7 (170-213)||(3478683-3478726)
chr7 (54-208)||(1321011-1321166)
chr7 (55-205)||(33719183-33719334)
chr7 (7-71)||(8745324-8745388)
chr7 (169-208)||(6716445-6716484)
chr7 (122-208)||(16828809-16828894)
chr7 (142-208)||(16954795-16954861)
[»] chr5 (12 HSPs)
chr5 (58-213)||(8297694-8297848)
chr5 (104-208)||(30097601-30097705)
chr5 (7-208)||(14302153-14302355)
chr5 (57-213)||(26405252-26405406)
chr5 (54-213)||(7682770-7682930)
chr5 (7-213)||(26045667-26045874)
chr5 (169-213)||(13953952-13953996)
chr5 (104-210)||(7195008-7195113)
chr5 (79-204)||(33109913-33110035)
chr5 (142-207)||(37108105-37108170)
chr5 (167-213)||(25992332-25992378)
chr5 (150-207)||(7391709-7391766)
[»] chr8 (5 HSPs)
chr8 (78-213)||(17656440-17656575)
chr8 (7-213)||(10248269-10248477)
chr8 (169-208)||(2273760-2273799)
chr8 (170-213)||(12197779-12197822)
chr8 (170-213)||(12442207-12442250)
[»] chr1 (13 HSPs)
chr1 (93-213)||(34775129-34775249)
chr1 (56-198)||(31290740-31290880)
chr1 (54-213)||(32882583-32882744)
chr1 (142-208)||(27102489-27102554)
chr1 (167-213)||(9313044-9313090)
chr1 (97-208)||(46768437-46768548)
chr1 (142-206)||(52278589-52278652)
chr1 (17-198)||(10785180-10785359)
chr1 (176-210)||(32863253-32863287)
chr1 (154-213)||(16149093-16149153)
chr1 (174-213)||(376510-376549)
chr1 (58-136)||(16577480-16577560)
chr1 (176-208)||(4652128-4652160)
[»] scaffold0050 (1 HSPs)
scaffold0050 (54-207)||(36926-37078)
[»] chr6 (6 HSPs)
chr6 (104-208)||(15120311-15120415)
chr6 (7-107)||(3880405-3880508)
chr6 (178-213)||(17278166-17278201)
chr6 (167-208)||(3880321-3880362)
chr6 (170-207)||(20701507-20701544)
chr6 (184-213)||(26534435-26534464)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 4170915 - 4171121
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4170915 tttggtgttaaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatggatggttggatatcatttatacaatggtcattt 4171014  T
Q  107 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 206  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171015 tcgtgaaggagtctattttaggtgatgacgtatattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 4171114  T
Q  207 cgacgcc 213  Q
    |||||||    
T  4171115 cgacgcc 4171121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 50518947 - 50518796
Alignment:
Q  57 ggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 156  Q
    |||||||||||||||| ||| ||| |||||| ||| |||||||||  | | ||||||||||||| ||||||||| ||| | ||||||| | ||||||| |    
T  50518947 ggtgagtagtgacgatggatcgttagatatcgtttttacagtggtggtat-cgtgaaggagtctgttttagatggtgaggtgtattttgt-tgggtgtgg 50518850  T
Q  157 tcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgac 210  Q
    ||||||  | |||||||||||||||||||||| |||||||||||||||||||||    
T  50518849 tcctcatgggtgtttttagggtgtttattttcgggtgttccgcctatatacgac 50518796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 14194152 - 14194300
Alignment:
Q  55 ggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgt 154  Q
    |||||||||||||||||| ||||||||||||||  |||| |||||| |  |||||||| ||||||| |||||| || ||| | ||| |||| ||||||||    
T  14194152 ggggtgagtagtgacgatggatggttggatatc-gttattcagtgg-cgatttcgtgatggagtctgttttaggtggtgacgtgta-ttttggtgggtgt 14194248  T
Q  155 tgtcctcaatga-tgtttttagggtgtttattttcaggtgttccgcctatata 206  Q
     |||||| |||| |||||||||| ||||||||||| | |||||||||||||||    
T  14194249 ggtcctc-atgagtgtttttaggatgtttattttcggatgttccgcctatata 14194300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 37123551 - 37123708
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 104  Q
    |||| ||||| ||||||||||||| | || ||||||||||  |    || ||||||||||||| | || ||||  |||||||| ||| |||||||||| |    
T  37123551 tttgatgttctggactgagagtttaatttggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgt 37123650  T
Q  105 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaa 163  Q
    |||||||||| ||||||||||| ||| ||||| ||| |||| |||||||||||| ||||    
T  37123651 tttcgtgaagaagtctattttatatggtgatgtgta-ttttggtgggtgttgtcttcaa 37123708  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 14893260 - 14893302
Alignment:
Q  166 atgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14893260 atgtttttagggtgtttattttcaggtgttccgcctatatacg 14893302  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 41039462 - 41039527
Alignment:
Q  141 ttttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 206  Q
    ||||| |||||||||||| |||  | |||||||||||||||||||||| |||||||||||||||||    
T  41039462 tttttggtgggtgttgtcttcacgggtgtttttagggtgtttattttctggtgttccgcctatata 41039527  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 25647888 - 25648054
Alignment:
Q  38 aggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgc 137  Q
    |||||||||||||   ||||||||||||||| ||| |||||||||||||| ||| | |||||||  ||| ||||| ||||| | |||||  || |||       
T  25647888 aggggtgtttttatttgggggtgagtagtgatgatggatggttggatatcgttttt-cagtggtggttt-cgtgatggagtatgttttatgtggtgacat 25647985  T
Q  138 gtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    || | ||| |||||||| |||||||    |||||||||||||||||||||| ||||||||| ||||||||    
T  25647986 gt-tatttggtgggtgtggtcctcatgtgtgtttttagggtgtttattttcgggtgttccgtctatatac 25648054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 32010121 - 32010163
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatacgacgc 212  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  32010121 ttttaaggtgtttattttcaggtattccgcctatatacgacgc 32010163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 28937472 - 28937431
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  28937472 tgtttttagggtgtttattttcgggtgttccgcttatatacg 28937431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 46358219 - 46358167
Alignment:
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 156  Q
    ||||||||||||||||| |||||| ||||||||  |||| |||||||||||||    
T  46358219 ttttcgtgaaggagtctgttttaggtgatgatgtttattctttgtgggtgttg 46358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 14280323 - 14280253
Alignment:
Q  142 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||| ||||||||||||||||  ||| |||| || ||||||| |||| ||||||||||||||||||| ||||    
T  14280323 ttttagtgggtgttgtcctcag-gatattttcagagtgtttactttcgggtgttccgcctatatacggcgcc 14280253  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 25594256 - 25594213
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacgacgc 212  Q
    |||||| |||||||| |||| |||||||||||||||||||||||    
T  25594256 tttttatggtgtttactttcgggtgttccgcctatatacgacgc 25594213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 28937574 - 28937502
Alignment:
Q  57 ggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaaggagtctattttag 127  Q
    ||||||||||| |||| | ||||  |||||||| ||| ||||||||||| ||||||||||| |||| ||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttag 28937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 46358129 - 46358092
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  46358129 ttttaaggtgtttattttcaggtgtttcgcctatatac 46358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 47946049 - 47946078
Alignment:
Q  184 ttttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||||||||||||||||    
T  47946049 ttttcaggtgttccgcctatatacgacgcc 47946078  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 7696133 - 7696333
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 106  Q
    |||||||||||||||   |||||||| ||| ||||||||||||  ||||| |||||||||||||||   |||||| ||||||||| |||| ||||| |||    
T  7696133 tttggtgttcaggaccaggagttttatttttaggggtgtttttctaagggagtgagtagtgacgatgagtggttgaatatcatttttacattggtcgttt 7696232  T
Q  107 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 206  Q
    |||||||||||| |||||||| || ||||| ||| |||| |||||||||||||||   | |||||||| ||||||||||||  |||||||||||||||||    
T  7696233 tcgtgaaggagtttattttaggtggtgatgtgta-ttttggtgggtgttgtcctcgggggtgtttttaaggtgtttatttttgggtgttccgcctatata 7696331  T
Q  207 cg 208  Q
    ||    
T  7696332 cg 7696333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 4974990 - 4975122
Alignment:
Q  81 ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtg 179  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| |||||| || || || ||| |||  ||||||||| ||||||| ||||||||| ||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttg-gtgggtgttatcctcaaggatgtttttcagggtg 4975088  T
Q  180 tttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||| ||||||| ||||||||||||||||    
T  4975089 tttattttcgggtgttcagcctatatacgacgcc 4975122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 4992898 - 4993030
Alignment:
Q  81 ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtg 179  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| |||||| || || || ||| |||  ||||||||| ||||||| ||||||||| ||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttg-gtgggtgttatcctcaaggatgtttttcagggtg 4992996  T
Q  180 tttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||| ||||||| ||||||||||||||||    
T  4992997 tttattttcgggtgttcagcctatatacgacgcc 4993030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 13337449 - 13337627
Alignment:
Q  25 gagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattt 124  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||| | || | ||||||| ||| ||| |||||| ||||||||| |||||||        
T  13337449 gagttttattttgaggggtgtttttctaagggggtgagtagtgacgatgggtgat-ggatatcgttt-taccgtggtc-ttttcgtgagggagtct---- 13337541  T
Q  125 tagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
      | ||  |||| ||| ||   ||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||    
T  13337542 --ggtggcgatgtgtaattaa-gtgggtgttgtcctcaggggtgtttttagggtgtttattttcaggtgttccacctatatacgacgcc 13337627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 12342992 - 12343126
Alignment:
Q  8 ttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcatttt 107  Q
    |||||||| ||||||| ||||||   |||||||||||||| | |  |||||||||||||||||||   |||||||||||| ||| ||||| |||| ||||    
T  12342992 ttggtgttgaggactgggagtttatttttgaggggtgtttcttg--gggggtgagtagtgacgatgagtggttggatatcgtttttacagaggtcgtttt 12343089  T
Q  108 cgtgaaggagtctattttagatgatgatgcgtatttt 144  Q
    ||||||||||||| |||||| || ||| | |||||||    
T  12343090 cgtgaaggagtctgttttaggtggtgacgtgtatttt 12343126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 37770461 - 37770355
Alignment:
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 203  Q
    ||||||||||||||||| |||||| || ||| | | |||||  ||||||| | |||||| || |||||||||||||||||||||| ||||||||||||||    
T  37770461 ttttcgtgaaggagtctgttttaggtggtgacgtggattttg-gtgggtggtatcctca-tggtgtttttagggtgtttattttcgggtgttccgcctat 37770364  T
Q  204 atacgacgc 212  Q
    |||||||||    
T  37770363 atacgacgc 37770355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 10173326 - 10173284
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatacgacgc 212  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  10173326 ttttagggtgtttattttcaggtgttccgcctatatacaacgc 10173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 22884852 - 22884818
Alignment:
Q  179 gtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||| ||||||||||||||||||||||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcc 22884818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 34230445 - 34230573
Alignment:
Q  78 gttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttaggg 177  Q
    |||||||||| ||| || ||||||| |||||||| | |||||| ||| ||||| ||| | |||||||  |||| |||||| || |  | |||||||| |     
T  34230445 gttggatatcgtttttatagtggtcgttttcgtggaagagtctgttt-agatggtgacgtgtattttg-gtggatgttgttctaaggggtgtttttacga 34230542  T
Q  178 tgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||||||  |||||||||||||||||||    
T  34230543 tgtttattttttggtgttccgcctatatacg 34230573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 41086554 - 41086512
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacga 209  Q
    |||||||||||| ||||||||| |||||| |||||||||||||    
T  41086554 tgtttttagggtatttattttcgggtgtttcgcctatatacga 41086512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 4472276 - 4472320
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||| ||||||||||||| | ||||||| ||||||||||||||    
T  4472276 tttttatggtgtttattttcggatgttccgtctatatacgacgcc 4472320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 33533500 - 33533468
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgc 199  Q
    ||||||||||||||||||||||| |||||||||    
T  33533500 tgtttttagggtgtttattttcaagtgttccgc 33533468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 38637143 - 38636948
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 106  Q
    ||||||||||| || || |||||||| | | ||||||||||||  ||||||||||||||||||||| | |||||||||||||||| ||||| |||  |||    
T  38637143 tttggtgttcaagattgggagttttagtataaggggtgtttttctaagggggtgagtagtgacgatgggtggttggatatcatttttacagcggttgttt 38637044  T
Q  107 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtt-tttagggtgtttattttcaggtgttccgccta 202  Q
    |||||||||||| | |||||| || |||   ||| |||| |||||||||||||||   | | || |||| |||||||||||||||||||||||||||    
T  38637043 tcgtgaaggagtttgttttaggtggtgacatgta-ttttcgtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta 38636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 41117878 - 41117676
Alignment:
Q  6 gtttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcatt 105  Q
    |||||||||||| ||  | |||||||| | ||||||||||||||  || |||||||||| ||||||| | |||||||||||| ||| ||||  |||  ||    
T  41117878 gtttggtgttcatgatcgggagttttattctgaggggtgtttttctaaaggggtgagtaatgacgatgggtggttggatatcgtttttacaacggttgtt 41117779  T
Q  106 ttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtt-tttagggtgtttattttcaggtgttccgcctata 204  Q
    |||||| | |||||| || ||| || ||||  |||||||  |||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||    
T  41117778 ttcgtgcatgagtctgttctaggtggtgatatgtattttg-gtgggtgttgtcctca-tggtgttatttagggtgtttattttcgggtgttccgcctata 41117681  T
Q  205 tacga 209  Q
    |||||    
T  41117680 tacga 41117676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 49528243 - 49528390
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattt 106  Q
    ||||||||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||| ||| |||||||| ||||| |||  | |||||||  |     
T  49528243 tttggtgttcaagactgagagttttattttgaggggtgtttttctaagggggtgagtagtgaagatggatggttgaatatcgttttaatagtggtcggtg 49528342  T
Q  107 tcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgtt 155  Q
    || |||||||||||||||||| |||||| | || ||||| |||||||||    
T  49528343 tcatgaaggagtctattttaggtgatgacgtgt-tttttggtgggtgtt 49528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 25753343 - 25753499
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 104  Q
    |||| ||||||||||||| ||||| | ||||||||||||||||    |||||||||||||||||||  |||  |||||||| |  || |||||||| | |    
T  25753343 tttgatgttcaggactgaaagtttaattttgaggggtgtttttctttgggggtgagtagtgacgatgaatgatgttggataccgattttacagtggccct 25753442  T
Q  105 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctca 162  Q
    |||||||||||||| | |||||| ||||||   ||| |||| ||||||||||||||||    
T  25753443 tttcgtgaaggagtttgttttaggtgatgacttgta-ttttggtgggtgttgtcctca 25753499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 16832931 - 16832732
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 104  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||     |||||||||||||||||  | ||||  |||||||| ||| ||||| |||| |    
T  16832931 tttggtgttcaagactgtgagtttaattttgaggggtgttttttctttggggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgt 16832832  T
Q  105 ttt-cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 203  Q
    ||| |||| |||| | | |||||| || |||  ||| | ||| ||||||||||||||||     ||||||||||||||||||||  ||||||||||||||    
T  16832831 ttttcgtgcaggaatatgttttaggtggtga--cgtttatttggtgggtgttgtcctcaggagagtttttagggtgtttattttttggtgttccgcctat 16832734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 22811023 - 22810950
Alignment:
Q  54 gggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttag 127  Q
    ||||||||||||||||||| |||||| ||||||| ||| ||||||||||  |||||||||| ||||| ||||||    
T  22811023 gggggtgagtagtgacgatggatggtaggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttag 22810950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 28967208 - 28967246
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28967208 tttttagggtgtttattttcaggtgttccgcctatatac 28967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 19673271 - 19673377
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 104  Q
    ||||||||| |||||||||||||| | ||||||| ||||| ||    ||||||||||||||||||  ||||  |||||||||   || ||||||||||||    
T  19673271 tttggtgttgaggactgagagtttaattttgaggagtgttctt---tgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcat 19673367  T
Q  105 tttcgtgaag 114  Q
    ||||||||||    
T  19673368 tttcgtgaag 19673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 19815130 - 19815024
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 104  Q
    ||||||||| |||||||||||||| |  |||||  ||||| || |   ||||||||||||||| |  ||||||  |||||||||||| ||| ||||||||    
T  19815130 tttggtgttgaggactgagagtttaatcttgagaagtgttctttg---ggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcat 19815034  T
Q  105 tttcgtgaag 114  Q
    ||||||||||    
T  19815033 tttcgtgaag 19815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 43077307 - 43077342
Alignment:
Q  176 ggtgtttattttcaggtgttccgcctatatacgacg 211  Q
    ||||||||||||||||||||| ||||||||||||||    
T  43077307 ggtgtttattttcaggtgttctgcctatatacgacg 43077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 25754206 - 25754247
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    |||||||| ||||||||||||||| ||||||| |||||||||    
T  25754206 tgtttttatggtgtttattttcagatgttccgtctatatacg 25754247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 39420784 - 39420743
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacgac 210  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  39420784 tttttatggtgttcattttcgggtgttccgcctatatacgac 39420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 48098645 - 48098677
Alignment:
Q  175 gggtgtttattttcaggtgttccgcctatatac 207  Q
    |||||||||||||| ||||||||||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatac 48098677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 24324707 - 24324520
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtc-att 105  Q
    ||||||||||||||| |||||||||| ||||||||||||||||     |||||||||||||||||| | |||||||||||| ||  |||| |||||  ||    
T  24324707 tttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacgat-ggtggttggatatcgttcttacaatggtcgttt 24324609  T
Q  106 ttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgtt 195  Q
    ||||||||||||||| |||||  || ||| | ||| |||| ||| ||||||||||||| | ||||||||| |||||||||||| ||||||    
T  24324608 ttcgtgaaggagtctgttttaagtggtgacgtgta-ttttggtgagtgttgtcctcaagggtgtttttagagtgtttattttcgggtgtt 24324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 42533035 - 42532963
Alignment:
Q  141 ttttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||||||||||| |||| |  ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  42533035 ttttttgtgggtgttgtcatcaagggagtttttagggtgtttatttccaggtgttccgcctatatacggcgcc 42532963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 3478683 - 3478726
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  3478683 ttttagggtgtttattttcgggtgttccgcctatatacggcgcc 3478726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 1321011 - 1321166
Alignment:
Q  54 gggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaa-ggagtctattttagatgatgatgcgtattttttgtgg 150  Q
    |||||||||||||||||||   ||||  | |||||| ||| |||||||||   ||||||||| || |||| |||||| || ||||| |||||||  ||||    
T  1321011 gggggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttg-gtgg 1321109  T
Q  151 gtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
     || |||| |||| |  ||||||||||||||||||||| || ||||||||||||||||    
T  1321110 atggtgtcttcaaggg-gtttttagggtgtttattttcgggagttccgcctatatacg 1321166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 33719183 - 33719334
Alignment:
Q  55 ggggtgagtagtgacgat-agatg-gttggatatcatttatacagtggtc-attttcgtgaaggagtctattttagatgatgatgcgtattttttgtggg 151  Q
    |||||||||||||||||| ||  | |||||||||||||| ||||| ||||  |||| |||||||||||  ||||||  | ||||  ||| |||| |||||    
T  33719183 ggggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggta-ttttggtggg 33719281  T
Q  152 tgttgtcctcaatga-tgtttttagggtgtttattttcaggtgttccgcctatat 205  Q
    |||||||||| |||| ||||||||||||||||| |||| | ||||||||||||||    
T  33719282 tgttgtcctc-atgagtgtttttagggtgtttactttc-gatgttccgcctatat 33719334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8745324 - 8745388
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacga 71  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||    ||||||||||||||||||    
T  8745324 tttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 6716484 - 6716445
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  6716484 tttttagggtgtttattttcaggtgttccggttatatacg 6716445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 16828894 - 16828809
Alignment:
Q  122 ttttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||||||||||| |||||||  |||| |||| || |||  | | ||| |||| ||||||||||| |||||||||||||||||||    
T  16828894 ttttagatgatgatgtgtattttg-gtggttgttttcttcaggggtatttctaggatgtttattttcgggtgttccgcctatatacg 16828809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 16954795 - 16954861
Alignment:
Q  142 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||||| |||| || |||  | ||||||||| |||||||||||| | |||||||||||||||||    
T  16954795 tttttgtggttgttttcttcaggggtgtttttagcgtgtttattttcggatgttccgcctatatacg 16954861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 8297694 - 8297848
Alignment:
Q  58 gtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgt 157  Q
    ||||||||||||||||| |||||||| ||| ||| |||| ||||| ||||| ||||||||| | |||||| || ||||| ||| |||| |||| |||| |    
T  8297694 gtgagtagtgacgataggtggttggaaatcgtttttacattggtctttttcttgaaggagtgtgttttaggtggtgatgtgta-ttttggtggatgttat 8297792  T
Q  158 cctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||  | |||||||||||||| |||||||||||||||||||||| ||| |||||    
T  8297793 cctcaggggtgtttttagggtgtgtattttcaggtgttccgcctatgtacaacgcc 8297848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 30097601 - 30097705
Alignment:
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttt-tagggtgtttattttcaggtgttccgccta 202  Q
    ||||||||||||||||| |||||| || ||| | |||||||  |||||||||||| |||  |||||||| |||||||||||||||| |||||||||||||    
T  30097601 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttg-gtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgccta 30097699  T
Q  203 tatacg 208  Q
    ||||||    
T  30097700 tatacg 30097705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 14302355 - 14302153
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcat 104  Q
    |||||||||||||| || |||||| | |||||||||| |||||    |||| ||||||||||||| || ||||  |||||||| ||| |||| ||||| |    
T  14302355 tttggtgttcaggagtgggagtttaattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgt 14302256  T
Q  105 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctata 204  Q
    ||||| |||||| ||| |||||| || ||| | |||||||  |||||||||||| |||  | |||||||||| | ||||||||  ||||||||  |||||    
T  14302255 tttcgcgaaggaatctgttttaggtggtgacgtgtattttg-gtgggtgttgtcatcaggggtgtttttaggatttttatttttgggtgttccttctata 14302157  T
Q  205 tacg 208  Q
    ||||    
T  14302156 tacg 14302153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 26405406 - 26405252
Alignment:
Q  57 ggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttg 156  Q
    |||||||||||||||| | || ||||||||  |||  |||||| |||||| | ||||| ||||| |||||| || ||| | |||||||  |||| |||||    
T  26405406 ggtgagtagtgacgatgggtgattggatatggttttaacagtg-tcatttccatgaagaagtctgttttaggtggtgacgtgtattttg-gtggttgttg 26405309  T
Q  157 tcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||  | |||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  26405308 tcctcaggggtgtttttaaggtgtttattttcgggtgttccgactatatacgacgcc 26405252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 7682770 - 7682930
Alignment:
Q  54 gggggtgagtagtgacgatagatggttggatatca--tttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtggg 151  Q
    |||| |||||||||||||| ||||||  || || |  ||| ||| |||||| |||| ||||| ||||||||||||| || ||||| |||||||  |||||    
T  7682770 ggggttgagtagtgacgatggatggtgcgagataaagtttttacggtggtcgtttttgtgaaagagtctattttaggtggtgatgtgtattttg-gtggg 7682868  T
Q  152 tgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||| ||||    | ||||| ||||| |||||||| | ||||||||||||||||||||||    
T  7682869 tgttgttctcataagtattttttgggtgcttattttcggatgttccgcctatatacgacgcc 7682930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 26045874 - 26045667
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtcat 104  Q
    ||||||||| |||| ||||||||| | ||||||||||||||||     |||||||||||||||||| |  |  ||||||| || ||| ||| ||||||||    
T  26045874 tttggtgtttaggattgagagtttaattttgaggggtgttttt-ctttggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcat 26045776  T
Q  105 tttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgttccgcctat 203  Q
    |||| ||||| ||||| |||||| || ||| | | | |||| ||||||||||||||||  |  | |||||||||||||||||||  | ||||||| ||||    
T  26045775 tttcatgaagaagtctgttttaggtggtgacgtg-aattttggtgggtgttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctat 26045677  T
Q  204 atacgacgcc 213  Q
    ||||| ||||    
T  26045676 atacggcgcc 26045667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 13953996 - 13953952
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  13953996 tttttaaggtgtttattttcaggtgttccgcctatatacggcgcc 13953952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 7195113 - 7195008
Alignment:
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctat 203  Q
    |||| |||||||||||| |||||| || ||| | |||||||  ||||||||||||| ||  | |||||||||||||||||||||  | |||||||| |||    
T  7195113 tttttgtgaaggagtctgttttaggtggtgacgtgtattttg-gtgggtgttgtccgcagcggtgtttttagggtgtttatttttggatgttccgcatat 7195015  T
Q  204 atacgac 210  Q
    | |||||    
T  7195014 aaacgac 7195008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 33110035 - 33109913
Alignment:
Q  79 ttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagggt 178  Q
    ||||||||| ||| |||||||||| |||||||||||| || | |||||| |||||| | ||| |||| |||||||||||| |  | | ||||||||  ||    
T  33110035 ttggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgta-ttttggtgggtgttgtcat--agggtgtttttaaagt 33109939  T
Q  179 gtttattttcaggtgttccgcctata 204  Q
    |||||||||| |||||| || |||||    
T  33109938 gtttattttcgggtgtttcggctata 33109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 37108105 - 37108170
Alignment:
Q  142 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    |||| ||||||||| ||||||  | |||||||||||||||||||||  | ||||||||||||||||    
T  37108105 ttttggtgggtgttatcctcatgggtgtttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 25992332 - 25992378
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||||| || |||||||||| |||||||| ||||    
T  25992332 tgtttttagggtgtttattgtcgggtgttccgcatatatacggcgcc 25992378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 7391766 - 7391709
Alignment:
Q  150 ggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    |||||||||||||  | |||||||||| ||| || |||||||| ||||||||||||||    
T  7391766 ggtgttgtcctcatgggtgtttttaggttgtgtactttcaggttttccgcctatatac 7391709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 17656575 - 17656440
Alignment:
Q  78 gttggatatcatttatacagtggtcatttt-cgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgtttttagg 176  Q
    |||||||||| ||| | |||||||| |||| | ||||||||||| ||||||||| ||| | | |||||  ||||||||||||||||| | ||||||||||    
T  17656575 gttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttg-gtgggtgttgtcctcaagggtgtttttagg 17656477  T
Q  177 gtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||| |||||| ||||||||| ||||||||||||||    
T  17656476 gtgttaattttcgggtgttccgtctatatacgacgcc 17656440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 10248477 - 10248269
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttt-tagaagggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtca 103  Q
    ||||||||| |||||| ||||||| | ||||| ||||||||  | |  ||||||||||||||||||| | ||  || |||| || ||| ||||||||||     
T  10248477 tttggtgttgaggacttagagtttaattttgacgggtgtttcgttg--gggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcg 10248380  T
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcagg-tgttccgcct 201  Q
    ||||||||||||||| | |||||| || ||| | |||||||  | ||||||||||||||| | ||||||| | ||||||| |||| ||| ||||||||||    
T  10248379 ttttcgtgaaggagtttgttttaggtggtgacgtgtattttg-gcgggtgttgtcctcaagggtgttttttaaggtgtttttttttagggtgttccgcct 10248281  T
Q  202 atatacgacgcc 213  Q
    ||||||||||||    
T  10248280 atatacgacgcc 10248269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 2273799 - 2273760
Alignment:
Q  169 tttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  2273799 tttttagggtgtttattttcaggtgttccgcttttatacg 2273760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 12197822 - 12197779
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||||||||||||  |||||||||||||| ||||||||    
T  12197822 ttttagggtgtttattttcccgtgttccgcctatagacgacgcc 12197779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 12442250 - 12442207
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||||||||||||  |||||||||||||| ||||||||    
T  12442250 ttttagggtgtttattttcccgtgttccgcctatagacgacgcc 12442207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 34775129 - 34775249
Alignment:
Q  93 tacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcagg 191  Q
    |||||| ||| ||||||||||||||||| |||||| |||||| | |||||||  |||||||||||||||| || | ||||| | ||||||||||||| ||    
T  34775129 tacagttgtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttg-gtgggtgttgtcctcattggtattttttaaggtgtttattttcggg 34775227  T
Q  192 tgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||| ||||    
T  34775228 tgttccgcctatatacggcgcc 34775249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 31290880 - 31290740
Alignment:
Q  56 gggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgtt 155  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||| |||||| ||||||||||  ||||| || ||||| |||  | |   |||  ||    
T  31290880 gggtgagtagtgacgatggatggttggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtggtgatgtgta--tatgaagggaatt 31290783  T
Q  156 gtcctcaatgatgtttttagggtgtttattttcaggtgttccg 198  Q
    |||||||  | |||||||| ||||||||||||| |||||||||    
T  31290782 gtcctcaggggtgtttttatggtgtttattttcgggtgttccg 31290740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 32882583 - 32882744
Alignment:
Q  54 gggggtgagtagtgacgatagatggt--tggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtggg 151  Q
    ||||||||||||||||||| | ||||  |||||||| | | ||||||| || ||||||||||||||||  ||||||  | |||||  ||||||  |||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttg-gtggg 32882681  T
Q  152 tgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||   | ||| ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  32882682 tgttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcc 32882744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 27102489 - 27102554
Alignment:
Q  142 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    |||| |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||    
T  27102489 ttttggtgggtgttgtcctca-tggtgtttttagggtgtttattttcgggtgttccgcctatatacg 27102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 9313090 - 9313044
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9313090 tgtttttagggtgtttattttcgggtgttccgcctatatacgacgcc 9313044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 46768437 - 46768548
Alignment:
Q  97 gtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgtt 195  Q
    |||||| ||||||||||||||||| |||||| || ||| | | | |||| |||||||||||||||   | || |||||||||||||||||||| ||||||    
T  46768437 gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtg-aattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 46768535  T
Q  196 ccgcctatatacg 208  Q
    ||||||| |||||    
T  46768536 ccgcctacatacg 46768548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 52278589 - 52278652
Alignment:
Q  142 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatata 206  Q
    |||| |||||||||||||||  || ||| |||| |||||||||||||||||||||||||||||||    
T  52278589 ttttggtgggtgttgtcctcg-tggtgtctttaaggtgtttattttcaggtgttccgcctatata 52278652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 10785359 - 10785180
Alignment:
Q  17 aggactgagagttttactttgaggggtgtttttagaagggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaagga 116  Q
    ||||||||||||||   |||||||||||||| | |   ||| |||||||||||||| | |||||||||||| ||| | |||  ||| |||||||||||||    
T  10785359 aggactgagagtttatttttgaggggtgtttcttgc--gggatgagtagtgacgatgggtggttggatatcgttttttcagatgtcgttttcgtgaagga 10785262  T
Q  117 gtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgttccg 198  Q
    |||| |||||  |||| |   ||| ||||  |||||||||||||||| | || |||||| ||||||||| ||  |||||||||    
T  10785261 gtctgttttaagtgataacatgta-ttttgatgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccg 10785180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 32863287 - 32863253
Alignment:
Q  176 ggtgtttattttcaggtgttccgcctatatacgac 210  Q
    |||||||||||||||||||||||||||||||||||    
T  32863287 ggtgtttattttcaggtgttccgcctatatacgac 32863253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 16149093 - 16149153
Alignment:
Q  154 ttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    |||||||||| | ||| |||||||||||||||||||  |||||||||||||||||| ||||    
T  16149093 ttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcc 16149153  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 376549 - 376510
Alignment:
Q  174 agggtgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgcc 376510  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 16577480 - 16577560
Alignment:
Q  58 gtgagtagtgacgatagatggtt--ggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatg 136  Q
    |||||||| ||||||  ||||||  ||||||||||| |  ||||||| |||||||||| |||||| |||||| ||||||||    
T  16577480 gtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgttttaggtgatgatg 16577560  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 4652128 - 4652160
Alignment:
Q  176 ggtgtttattttcaggtgttccgcctatatacg 208  Q
    ||||||| |||||||||||||||||||||||||    
T  4652128 ggtgtttgttttcaggtgttccgcctatatacg 4652160  T

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Target: scaffold0050 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 207
Target Start/End: Original strand, 36926 - 37078
Alignment:
Q  54 gggggtgagtagtgacgatagatggttggatatcatttatacagtggtcattttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtg 153  Q
    ||||||||||||||||| | ||||||||||| || ||| |||||||||   |||||||||||||||| |||||| || ||| | ||||||| | ||||||    
T  36926 gggggtgagtagtgacggtggatggttggatgtcgtttttacagtggt-ggtttcgtgaaggagtctgttttaggtggtgacgtgtattttgt-tgggtg 37023  T
Q  154 ttgtcctcaatgatg-tttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    | |||||||  | || |||||| ||||||||||||| | ||||||||||||||||    
T  37024 tggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctatatac 37078  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 15120415 - 15120311
Alignment:
Q  104 ttttcgtgaaggagtctattttagatgatgatgcgtattttttgtgggtgttgtcctcaatgatgttttt-agggtgtttattttcaggtgttccgccta 202  Q
    |||| ||||| |||||| |||||| || ||||| |||||||  |||| |||||||||||  ||||||||| |||||||||||| |||| ||||| |||||    
T  15120415 tttttgtgaatgagtctgttttaggtggtgatgtgtattttg-gtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgccta 15120317  T
Q  203 tatacg 208  Q
     |||||    
T  15120316 catacg 15120311  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 3880508 - 3880405
Alignment:
Q  7 tttggtgttcaggactgagagttttactttgaggggtgtttttaga-agggggtgagtagtgacgatagatg--gttggatatcatttatacagtggtca 103  Q
    ||||||||||| ||||  |||||| | ||||||||||||||||    ||||||||||||||||||| |||||  |||||||||| ||| || |||||||     
T  3880508 tttggtgttcaagacttggagtttaattttgaggggtgttttttcttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggtcg 3880409  T
Q  104 tttt 107  Q
    ||||    
T  3880408 tttt 3880405  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 17278201 - 17278166
Alignment:
Q  178 tgtttattttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgcc 17278166  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 3880362 - 3880321
Alignment:
Q  167 tgtttttagggtgtttattttcaggtgttccgcctatatacg 208  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  3880362 tgtttttagggtgtttattttttggtgttccgcttatatacg 3880321  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 20701544 - 20701507
Alignment:
Q  170 ttttagggtgtttattttcaggtgttccgcctatatac 207  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  20701544 ttttagtgtgtttatttccaggtgttccgcctatatac 20701507  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 26534464 - 26534435
Alignment:
Q  184 ttttcaggtgttccgcctatatacgacgcc 213  Q
    ||||||||||||||||||||||||||||||    
T  26534464 ttttcaggtgttccgcctatatacgacgcc 26534435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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