View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7325_high_10 (Length: 517)
Name: NF7325_high_10
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Original strand, 42302483 - 42302970
Alignment:
| Q |
10 |
aagaatatattcaataattcattataaaagataaagccaaggcattgtcctctctgaggattgtgtgtaagaaatggagaaagtgtcaaattaaatttaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42302483 |
aagaatatattcaataattcattataaaagataaagccaaggcattgtcctctctgaggattgtgtgtaagaaatagagaaagtgtcaaattaaatttaa |
42302582 |
T |
|
| Q |
110 |
agaaaggaatcatggtgagtgaacattgtctagacacggaaaaggaaaatagctaaagaacacttgcactcagtttacctagctaaattgactcccaaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42302583 |
agaaaggaatcatggtgagtgaacattgtctagacacggaaaagaaaaatagctaaagaacacttgcactcagtttacctagctaaattgactcccaaat |
42302682 |
T |
|
| Q |
210 |
ctcatttgcacttattaacaactttctctacaaaattagtatcatctcgttacatgaggtgaaaatgcaatattgaagtggcaaagaacatctaaccctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42302683 |
ctcatttgcacttattaacaactttctctacaaaattagtatcatctcgttacatgaggtcaaaatgcaatattgaagtggcaaagaacatctgaccctt |
42302782 |
T |
|
| Q |
310 |
tcaaataaacaaggaattgatgtgacataggtatgccaatattgtagcaaactcgacacaattggagtacccttctgctgtggggatatatccatatcat |
409 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42302783 |
tcaactaaacaaggaattgatgtgacataggtatgccaatattgtagcaaactcgacacaattggagtacccttctgctgtggggttatatccatatcat |
42302882 |
T |
|
| Q |
410 |
gtttgacaacttgtggttaaagttccaaattcaggaagatcatcttccagttccttttgaagaatagcagaagataaagattggtttg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
42302883 |
gtttgacaacttgtggttaaagttccaaattcaggaagatcatcttccagttcctttcgaagaatagcagaagataaagattgttttg |
42302970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 32355785 - 32355924
Alignment:
| Q |
162 |
ctaaagaacacttgcactcagtttacctagctaaattgactcccaaatctcatttgcacttattaacaactttctctacaaaattagtatcatctcgtta |
261 |
Q |
| |
|
|||||||||| | ||||||| |||| || ||| ||||||||||||||||||||| ||| ||||||||| ||| ||| || |||||| |||||| | || |
|
|
| T |
32355785 |
ctaaagaacattggcactcactttatctggctgaattgactcccaaatctcatt-gcatttattaacagcttgctcaaccaaattatcatcatcccattg |
32355883 |
T |
|
| Q |
262 |
catgaggtgaaaatgcaatattgaagtggcaaagaacatct |
302 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
32355884 |
catgaggtgggcatgcaataatgaagtggcaaagaacatct |
32355924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 42302995 - 42303093
Alignment:
| Q |
410 |
gtttgacaacttgtggttaaagttccaaattca------ggaagatcatcttcc-agttccttttgaagaatagcagaagataaagattggtttgtaac |
501 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42302995 |
gtttgataacttgtagttgaagttccaaattcaaattatggaagatcgtcttcccaactccttttgaagaatagcagaagataaagattggtttgtaac |
42303093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 42303945 - 42303879
Alignment:
| Q |
435 |
caaattcaggaagatcatcttccagttccttttgaagaatagcagaagataaagattggtttgtaac |
501 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
42303945 |
caaattctagaagatcgtcttccagctccttttgaagaataacagaagataaaaattgttttgtaac |
42303879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 42303799 - 42303756
Alignment:
| Q |
459 |
gttccttttgaagaatagcagaaga-taaagattggtttgtaac |
501 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
42303799 |
gttccttttgaagaatagcagaagactaaagattgttttgtaac |
42303756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 32355608 - 32355673
Alignment:
| Q |
11 |
agaatatattcaataattcattataaaagataaagccaaggcattgtcctctctgaggattgtgtg |
76 |
Q |
| |
|
||||||| | || ||||||||||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
32355608 |
agaatatgtgcagtaattcattataaaagagcaagccagggcattgctgtctctgaggattgtgtg |
32355673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 24405204 - 24405141
Alignment:
| Q |
438 |
attcaggaagatcatcttccagttccttttgaagaatagcagaagataaagattggtttgtaac |
501 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
24405204 |
attctggaagatcgtcttccagttcattgtgaagaatggcagaaggtaaagattgttttgtaac |
24405141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 24405306 - 24405243
Alignment:
| Q |
438 |
attcaggaagatcatcttccagttccttttgaagaatagcagaagataaagattggtttgtaac |
501 |
Q |
| |
|
|||| |||||||| || ||||| || | |||||||||| |||||||||||||||| |||||||| |
|
|
| T |
24405306 |
attctggaagatcgtcatccagctcatcttgaagaataacagaagataaagattgttttgtaac |
24405243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 10506498 - 10506456
Alignment:
| Q |
459 |
gttccttttgaagaatagcagaagataaagattggtttgtaac |
501 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
10506498 |
gttccttttgaagaataacagaaggtaaagattgttttgtaac |
10506456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University