View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_12 (Length: 438)
Name: NF7325_high_12
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 117 - 303
Target Start/End: Original strand, 33887637 - 33887829
Alignment:
| Q |
117 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
215 |
Q |
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| T |
33887637 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33887736 |
T |
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| Q |
216 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctct-----tcaactcaactcataaaaacaattctacaa |
303 |
Q |
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| T |
33887737 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33887829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 117 - 303
Target Start/End: Complemental strand, 33956613 - 33956421
Alignment:
| Q |
117 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33956613 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33956514 |
T |
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| Q |
216 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctcttcaactcaa-----ctcataaaaacaattctacaa |
303 |
Q |
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| T |
33956513 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33956421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 341 - 431
Target Start/End: Original strand, 33887828 - 33887918
Alignment:
| Q |
341 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtataatct |
431 |
Q |
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| T |
33887828 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct |
33887918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 33956422 - 33956332
Alignment:
| Q |
341 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtataatct |
431 |
Q |
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| T |
33956422 |
aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct |
33956332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33885332 - 33885369
Alignment:
| Q |
20 |
gcttgcacactgttattgccagaactaggttggagatg |
57 |
Q |
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| T |
33885332 |
gcttgcagactgttattgccagaactaggttggagatg |
33885369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33958920 - 33958883
Alignment:
| Q |
20 |
gcttgcacactgttattgccagaactaggttggagatg |
57 |
Q |
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| T |
33958920 |
gcttgcagactgttattgccagaactaggttggagatg |
33958883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 52469 - 52510
Alignment:
| Q |
234 |
ctaaaggaatggtttctaacttaggtggtatctcatctcttc |
275 |
Q |
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| T |
52469 |
ctaaaggaatgatttctaatttaggtggtatctcatcacttc |
52510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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