View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_13 (Length: 414)
Name: NF7325_high_13
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 45415995 - 45416380
Alignment:
| Q |
13 |
attctcgctgcactttcccaataagttaaatccgccgctttgccagctccaaggccacttgtttttgttggtgtgttgacattaacgaagattatatccg |
112 |
Q |
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| T |
45415995 |
attctcgctgcactttcccaataagttaaatccgccgctttgccagctccaaggccacttgtttttgttggtgtgttgacattaacaaagattatatccg |
45416094 |
T |
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| Q |
113 |
cttcataaacatgtttttctatatcagtgctgaagaggagattctttcctctacattgttgtataacttcttctaggccaggctcatagatagggagttt |
212 |
Q |
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| T |
45416095 |
cttcataaacatgtttttctatatcagtgctgaagaggagattctttcctctacattgttgtataacttcttctaggccaggctcatagatagggagttt |
45416194 |
T |
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| Q |
213 |
gtcgctgttccaagctgatatgcgagagtgagagatgtcaaccacagctacttcaattgaaggacatttgagggcaataacagccattgttggaccccct |
312 |
Q |
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| T |
45416195 |
gtcgctgttccaagctgatatgcgagagtgagagatgtcaaccacagctacttcaattgaaggacatttgagggcaataacagccattgttggaccccct |
45416294 |
T |
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| Q |
313 |
acatatccagctccaattccacagatcttcttaaccattttttgtttagttacaaattataacctgtgaagcatgtgtattacaat |
398 |
Q |
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| T |
45416295 |
acatatccagctccaattccacagatcttcttaaccattttttgtttagttacaaattataacctgtgaagcatgtgtgttacaat |
45416380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 32271919 - 32272039
Alignment:
| Q |
28 |
tcccaataagttaaatccgccgctttgccagctccaaggccacttgtttttgttggtgtgttgacattaacgaagattatatccgcttcataaacatgtt |
127 |
Q |
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| T |
32271919 |
tcccagtatgttaaatcagccgctttgccggctccaagaccatgagtttttgttggtgtgttcacagatacaaagactatatcagcttctgcaacatgtt |
32272018 |
T |
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| Q |
128 |
tttctatatcagtgctgaaga |
148 |
Q |
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| || | ||||||||||||| |
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| T |
32272019 |
tctccacttcagtgctgaaga |
32272039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 32272176 - 32272220
Alignment:
| Q |
285 |
ggcaataacagccattgttggaccccctacatatccagctccaat |
329 |
Q |
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| T |
32272176 |
ggcaatcacagccattgtgggaccaccaacatatccagctccaat |
32272220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 329
Target Start/End: Original strand, 3665048 - 3665256
Alignment:
| Q |
121 |
acatgtttttctatatcagtgctgaagaggagattctttcctctacattgttgtataacttcttctaggccaggctcatagatagggagtttgtcgctgt |
220 |
Q |
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| T |
3665048 |
acatgcttttcaacatctgtgctgaagaagaggttcttgccacggcattgctttacaacatcgtcaaggccaggttcatagattggaagggtgtcactgt |
3665147 |
T |
|
| Q |
221 |
tccaagctgatatgcgagagtgagagatgtcaaccacagctacttcaattgaaggacatttgagggcaataacagccattgttggaccccctacatatcc |
320 |
Q |
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|||| |||| ||||| | | ||| |||||||| ||||| |||||||| || ||||| || || ||||| || |||||||||||||| || |||||||| |
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| T |
3665148 |
tccaggctgcaatgcggggtttagatatgtcaacaacagccacttcaatggatggacacttaagtgcaatgactgccattgttggaccaccgacatatcc |
3665247 |
T |
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| Q |
321 |
agctccaat |
329 |
Q |
| |
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|| ||||| |
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| T |
3665248 |
ggcaccaat |
3665256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 19327346 - 19327402
Alignment:
| Q |
286 |
gcaataacagccattgttggaccccctacatatccagctccaattccacagatcttc |
342 |
Q |
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||||| ||||||||||||||||| || ||||| ||||||||||| | ||| |||||| |
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| T |
19327346 |
gcaatcacagccattgttggaccaccaacatagccagctccaatgcaacaaatcttc |
19327402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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