View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_17 (Length: 366)
Name: NF7325_high_17
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 9258937 - 9259129
Alignment:
| Q |
18 |
tcatgggaaatgtgagtttcaagtctcaccaaccaatatatgtaa-catggtttggtggctagttttgtttttatatgaaatactagtataagcaaaaga |
116 |
Q |
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| T |
9258937 |
tcatgggaaatgtgagtttcaagtctcaccaaccaatatatgtaaacatggtttggtggctagttttgtttttatatgaaatactagtataagcaaaaga |
9259036 |
T |
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| Q |
117 |
--agtggcaaacctggaaaaataatgaacagaaaaacttggggaaataataatcaaaatccgaattatatacttaccctaacttcaaaatata |
207 |
Q |
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| T |
9259037 |
gaagtggcaaaactggaaaaataatgaacagaaaaacatggggaaataataatcaaaatccgaattatatacttaccctaacttcaaaatata |
9259129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 339
Target Start/End: Original strand, 9264270 - 9264401
Alignment:
| Q |
208 |
tatatctaaatgttaattctgtcaagtactttgcatcattaatttgtgacaccacctccacaaatatattatattttgatattagtaactagggacgaag |
307 |
Q |
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| T |
9264270 |
tatatctcaatgttaattctgtcaagtactttgcatcattaatttgtgacaccacctccacaaatatattatattttgatattagtaactagggacgaag |
9264369 |
T |
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| Q |
308 |
catgtgtcgatatataatagtaattgcacgga |
339 |
Q |
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| T |
9264370 |
catgtgtcgatatatgatagtaattgcacgga |
9264401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 9263724 - 9263803
Alignment:
| Q |
207 |
atatatctaaatgttaattctgtcaagtactttgcatcattaatttgtgacaccacctccacaaatatattatattttga |
286 |
Q |
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| T |
9263724 |
atatatctcaatgttaattctgtcaagtactttgcatcattaatttgtgacagcacctaaaaaaatatattatattttga |
9263803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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