View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_19 (Length: 358)
Name: NF7325_high_19
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 18513752 - 18514049
Alignment:
| Q |
1 |
cctagtaggtgcaatggctgcatcagttttctacaggccgtaacatattatgtagttctggtgcaaattatttttatatcctcttttttctttaatattt |
100 |
Q |
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| T |
18513752 |
cctagtaggtgcaatggctgcatcagttttctacaggccgtaacatattatgtagttctggtgcaaattatttttatatcctcttttttctttaatattt |
18513851 |
T |
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| Q |
101 |
taaagtgatacaaagttgaaaatgaattgtacatgatatcatagagagaaaataggatatagcatacgagtgcaagatgataatagcatagtcagataaa |
200 |
Q |
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| T |
18513852 |
taaagtgatacaaagttgaaaatgaattgtacatgatatcatagagagaaaataggatatagcatacgagtgcaagatgataatagcatagtcagataaa |
18513951 |
T |
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| Q |
201 |
attaggcacgtacaagctgtgaaagaatcttgcannnnnnnggaccactgagttgtaatgactatgaacgatcaaagataagattactctcattttag |
298 |
Q |
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| T |
18513952 |
attaggcacgtacaagctgtgaaagaatcttgcctttttttggaccactgagttgtaatgactatgaacgatcaaagataagattactctcattttag |
18514049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 18514106 - 18514166
Alignment:
| Q |
296 |
tagtggaccatgtcaaccacacttttaaactatatacaatctttaagacaagtaatcacctat |
358 |
Q |
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| T |
18514106 |
tagtggaccatgtcaaccacacgtttaaac--tatacaatctttaagacaagtaattacctat |
18514166 |
T |
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