View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_22 (Length: 312)
Name: NF7325_high_22
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 18513774 - 18513479
Alignment:
| Q |
1 |
atgcagccattgcacctactaggatgaaatgttgttatggaatttttgctgtgatttactttcacatggcaattgtgaccgcatgttgcagacaactaca |
100 |
Q |
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| T |
18513774 |
atgcagccattgcacctactaggatgaaatgttgttatggaatttttgctgtgatttactttcacatggcagttgtgaccgcatgttgcagacaactaca |
18513675 |
T |
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| Q |
101 |
tgcaactgtaatatt--gcggccgcgtcatgtgcagttagaaacctttcttgtaacactcaaaatcttaacaaattttacatatgcagtgcaacaaacaa |
198 |
Q |
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| T |
18513674 |
tgcaactgtaatattgcgcggccgcgtcatgtgcagttagagacctttcttgtaacactcaaaatctt-acaaattttacatatgcagtgcaacaaacaa |
18513576 |
T |
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| Q |
199 |
aagaccagaacaaaacagaaaatcaatcttcttacgaatta-ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactga |
294 |
Q |
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| T |
18513575 |
aagaccagaacaaaatagaaaatcaatcttcttatgaattatttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactga |
18513479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 18487167 - 18487113
Alignment:
| Q |
240 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactga |
294 |
Q |
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| T |
18487167 |
ttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactga |
18487113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 18507092 - 18507038
Alignment:
| Q |
240 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactga |
294 |
Q |
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|||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18507092 |
ttgtctaaaacttacattaattgagaaccatttacttgtgaaaggataacactga |
18507038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 37046421 - 37046367
Alignment:
| Q |
240 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactga |
294 |
Q |
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|||||| |||||||||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
37046421 |
ttgtttgaaactcacattaattgagaaacatttacttgggaaaggataacactga |
37046367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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