View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_26 (Length: 287)
Name: NF7325_high_26
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 2573931 - 2573670
Alignment:
| Q |
10 |
gaacctgtggaactttatcagtgaaactctcaaatatgaaagataattcataacagtgtgttagaagaacaaaccttattcaaaagaaaacagatgccaa |
109 |
Q |
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| T |
2573931 |
gaacctatggaactttatcagtgaaactctcaaatatgaaagataattcataacagtgtgttagaagaacaaaccttattcaaaagaaaacagatgccaa |
2573832 |
T |
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| Q |
110 |
aaacttaaacaaagtgcacacaagattttctattattcaagcttaacgttgcagattacaacttgtgtttaaatactattgttcggtttacaatattatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573831 |
aaacttaaacaaagtgcacacaagattttctattattcatgcttaacgttgcagattacaacttgtgtttaaatactattgttcggtttacaatattatc |
2573732 |
T |
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| Q |
210 |
tccaaaccgtaccgcgggagctttctagctcgagcgacctgcccgcttatcaagctactaac |
271 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573731 |
tccaaaccgtaccgcaggggctttctagctcgagcgacctgcccgcttatcaagctactaac |
2573670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 38321485 - 38321556
Alignment:
| Q |
136 |
tttctattattcaagcttaacgttgcagattacaacttgtgtttaaatactattgttcggtttacaatatta |
207 |
Q |
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| T |
38321485 |
tttctattattcaagcttagagttccagtttacaacttgcgtttaaatattatggttcattttacgatatta |
38321556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 30421670 - 30421616
Alignment:
| Q |
133 |
gattttctattattcaagcttaacgttgcagattacaacttgtgtttaaatacta |
187 |
Q |
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| T |
30421670 |
gattttctattattcaagcttaaagttacagattacaacatgtgtttaaatacta |
30421616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 2888806 - 2888857
Alignment:
| Q |
133 |
gattttctattattcaagcttaacgttgcagattacaacttgtgtttaaata |
184 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
2888806 |
gattttctattattcaagcttagagttacagattacaacttgtgtttaaata |
2888857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 29262533 - 29262601
Alignment:
| Q |
134 |
attttctattattcaagcttaacgttgcagattacaacttgtgtttaaatactattgttcggtttacaa |
202 |
Q |
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| T |
29262533 |
attttctattatccaagcttagggttatagattacaacttgtgtttcaaaactacggttcagtttacaa |
29262601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 13992457 - 13992499
Alignment:
| Q |
162 |
agattacaacttgtgtttaaatactattgttcggtttacaata |
204 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||| |
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| T |
13992457 |
agattacaacttgtgtttaaatactaccgttcagtttacaata |
13992499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 38726790 - 38726840
Alignment:
| Q |
136 |
tttctattattcaagcttaacgttgcagattacaacttgtgtttaaatact |
186 |
Q |
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|||||||||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
38726790 |
tttctattattcaaacttagggttagagattacaacttgtgtttaaatact |
38726840 |
T |
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