View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7325_high_27 (Length: 281)
Name: NF7325_high_27
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 17597510 - 17597261
Alignment:
| Q |
19 |
aacatgtcaccaataacaccaagttcaggacaatcagcccattccaacaattctgtcaaaaccaaagagtttcttccttttccatgacctaaaatatata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597510 |
aacatgtcaccaataacaccaagttcaggacaatcagcccattccaacaattctgtcaaaaccaaagagtttcttccttttccatgacctaaaatatata |
17597411 |
T |
|
| Q |
119 |
gatcaaaccctaatttgtccaattcttcaagcactataggaatgtcttcaccagtatgcacttctctttcttcataagttatagtatcctcattgttcac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17597410 |
gatcaaaccctaatttgtccaattcttcaagcactataggaatgtcttcaccagtatgcacttctctttcttcataagttatagtatcctcattgttcac |
17597311 |
T |
|
| Q |
219 |
tgccttaagtcgaaacgaacctacacggtcttcgtccaactctctctgct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17597310 |
tgccttaagtcgaaacgaacctacacggtcttcgtccaactctctttgct |
17597261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University