View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7325_high_33 (Length: 241)
Name: NF7325_high_33
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1939957 - 1940180
Alignment:
| Q |
1 |
tcttaaaacttaaaaatctatccttcagatcattaaatatatcatcacgtccgtctttaacttctgctaaagtatctaacttgctgttattgagttgctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1939957 |
tcttaaaacttaaaaatctatccttcagatcattaaatatatcatcacgtccgtctttaacttctgctaaagtatctaacttgctgttattgagttgctg |
1940056 |
T |
|
| Q |
101 |
agtaaatcctggagatcccatagaagcctttaaagaagaacactgacttctcctgcaaacattagaactttgtttagaaagcagaagccacataaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1940057 |
agtaaatcctggagatcccatagaagcctttaaagaagaacactgacttctcctgcaaacattagaactttgtttagaaagcagaagccacataaagaaa |
1940156 |
T |
|
| Q |
201 |
gaaaaaagagatttcctatttctt |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
1940157 |
gaaaaaagagatttcatatttctt |
1940180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University