View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_36 (Length: 239)
Name: NF7325_high_36
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8549438 - 8549661
Alignment:
| Q |
1 |
ttatagactatatttaaatttcaatttgttgacatgatattgaactctttaccatcatccttttgtcaagttcaccactttataatttagttttacactg |
100 |
Q |
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| T |
8549438 |
ttatagactatatttaaatttcaatttgttgacatgatattgaactctttaccatcatccttttgtcaagttcaccactttataatttacttttacactg |
8549537 |
T |
|
| Q |
101 |
acatccgatgacagttgaattcaccatattgccacataagtccatttcaaaactgcaatattagaatttagagaataactgtaaaatactt-attgctat |
199 |
Q |
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| T |
8549538 |
acatccgatgacagttgaattcaccatattgccacataagtccatttcaaaactgcaatattagaatttagagaataactgtaaaatacttgattgctat |
8549637 |
T |
|
| Q |
200 |
ttattgtctgtttaaaactagttt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
8549638 |
ttattgtctgtttaaaactagttt |
8549661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8677079 - 8677020
Alignment:
| Q |
17 |
aatttcaatttgtt-gacatgatattgaactctttaccatcatccttttgtcaagttcac |
75 |
Q |
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| T |
8677079 |
aatttcaatttttttggcatgatattgaaccctttaccatcatccttttgtcaagttcac |
8677020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 8640034 - 8639975
Alignment:
| Q |
17 |
aatttcaatttgtt-gacatgatattgaactctttaccatcatccttttgtcaagttcac |
75 |
Q |
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| T |
8640034 |
aatttcaatttttttggcatgatagtgaaccctttaccatcatccttttgtcaagttcac |
8639975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 8643044 - 8643002
Alignment:
| Q |
33 |
catgatattgaactctttaccatcatccttttgtcaagttcac |
75 |
Q |
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| T |
8643044 |
catgatattggaccctttaccatcatccttttgtcaagttcac |
8643002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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