View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_40 (Length: 230)
Name: NF7325_high_40
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 56232689 - 56232885
Alignment:
| Q |
24 |
agggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagaccaaatcgtgccatggatc |
123 |
Q |
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| T |
56232689 |
agggacaacactcacaaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagaccaaatcgtgccatggatc |
56232788 |
T |
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| Q |
124 |
ctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatgttctctgctactcc |
220 |
Q |
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| T |
56232789 |
ctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatgttctctggtactcc |
56232885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 39190636 - 39190823
Alignment:
| Q |
24 |
agggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagaccaaatcgtgccatggatc |
123 |
Q |
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|||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
39190636 |
agggacaacactgttaaacctatcgttgatgatattaatgtcaaggcaacaccatttgactacggttctggtcacataagaccaaatcgtgccatggatc |
39190735 |
T |
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| Q |
124 |
ctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatgttctc |
211 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||| |||||||| |
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| T |
39190736 |
ctggtttggtgtatgagttaaacatcaatgattacataaactttctttgtttcttaggttataaccaaacacaaattagcatgttctc |
39190823 |
T |
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