View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7325_high_41 (Length: 222)

Name: NF7325_high_41
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7325_high_41
NF7325_high_41
[»] chr5 (9 HSPs)
chr5 (6-222)||(8549009-8549225)
chr5 (55-142)||(8527857-8527943)
chr5 (66-145)||(9002278-9002356)
chr5 (55-142)||(9075311-9075397)
chr5 (68-145)||(8643503-8643579)
chr5 (74-141)||(8640449-8640515)
chr5 (182-222)||(8545354-8545394)
chr5 (190-222)||(8635921-8635953)
chr5 (190-222)||(8643347-8643379)
[»] chr7 (1 HSPs)
chr7 (68-145)||(35777367-35777444)
[»] chr4 (1 HSPs)
chr4 (55-142)||(9442024-9442110)
[»] chr1 (1 HSPs)
chr1 (55-87)||(26324549-26324581)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 8549009 - 8549225
Alignment:
Q  6 ttggtgttatgatcctttccctggtacagttttaaccacattagcttaattagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8549009 ttggtgttatgatcctttccctggtacagttttaaccacattagcttaattagcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtt 8549108  T
Q  106 taaaattgcataaagaaaacaaagatcttgaatgatgactaaacatagcttaattttcataaagttatgatttttgaaaacatacatatctctttttagg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549109 taaaattgcataaagaaaacaaagatcttgaatgatgactaaacatagcttaattttcataaagttatgatttttgaaaacatacatatctctttttagg 8549208  T
Q  206 atgcaaatgatgtcttt 222  Q
    |||||||||||||||||    
T  8549209 atgcaaatgatgtcttt 8549225  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 8527943 - 8527857
Alignment:
Q  55 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 142  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||| ||||| |  ||||||||||||||||    
T  8527943 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattgcatgaagaagatgaagatcttgaatgatg 8527857  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 9002356 - 9002278
Alignment:
Q  66 tatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 145  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||| | |||||||  |||||||||||||| ||||    
T  9002356 tatgtaatattggtgttgttttgtataggtgtgcaaagttt-aaattgcgtgaagaaaatgaagatcttgaatgacgact 9002278  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 9075311 - 9075397
Alignment:
Q  55 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 142  Q
    |||| ||||||| ||||||| || ||||||||| |||||| ||||||| |||||| |||||| |||| ||  ||||||||||||||||    
T  9075311 ttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaa-ttgcatgaagagaatgaagatcttgaatgatg 9075397  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 8643579 - 8643503
Alignment:
Q  68 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 145  Q
    |||||||||||||||||||| |||||| ||||||| ||| |||||  || || ||||  |||||||||||||||||||    
T  8643579 tgtaatattggtgttattttatataggtgtgcaaa-ttttaaattatatgaaaaaaatgaagatcttgaatgatgact 8643503  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 8640515 - 8640449
Alignment:
Q  74 attggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgat 141  Q
    |||||||||||||| |||||| ||||||| ||| ||||||| | |||||||  |||||||||||||||    
T  8640515 attggtgttattttatataggtgtgcaaaattt-aaattgcgtgaagaaaatgaagatcttgaatgat 8640449  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 8545354 - 8545394
Alignment:
Q  182 aaaacatacatatctctttttaggatgcaaatgatgtcttt 222  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  8545354 aaaaaatacaaatctcattttaggatgcaaatgatgtcttt 8545394  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 8635953 - 8635921
Alignment:
Q  190 catatctctttttaggatgcaaatgatgtcttt 222  Q
    |||||||| ||||||||||||||||||||||||    
T  8635953 catatctcattttaggatgcaaatgatgtcttt 8635921  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 8643379 - 8643347
Alignment:
Q  190 catatctctttttaggatgcaaatgatgtcttt 222  Q
    |||||||| ||||||||||||||||||||||||    
T  8643379 catatctcattttaggatgcaaatgatgtcttt 8643347  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 35777444 - 35777367
Alignment:
Q  68 tgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatgact 145  Q
    |||||||||||||||||||||||||| |||||||||||| ||| ||||  ||| |||  |||||||||||||||||||    
T  35777444 tgtaatattggtgttattttgtatagtcgtgcaaagttttaaactgcagtaagtaaatgaagatcttgaatgatgact 35777367  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 9442110 - 9442024
Alignment:
Q  55 ttagtctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 142  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||| | | ||||| ||| |||||||  ||||||||||||||||    
T  9442110 ttagactttgttatgtaatattggtgttattttatataggtgtgcaaa-tattaaattacatgaagaaaatgaagatcttgaatgatg 9442024  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 26324549 - 26324581
Alignment:
Q  55 ttagtctttgttatgtaatattggtgttatttt 87  Q
    |||| ||||||||||||||||||||||||||||    
T  26324549 ttagactttgttatgtaatattggtgttatttt 26324581  T

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