View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7325_high_5 (Length: 638)
Name: NF7325_high_5
Description: NF7325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7325_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 241 - 628
Target Start/End: Original strand, 39209354 - 39209737
Alignment:
| Q |
241 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgtac |
340 |
Q |
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| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
341 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
440 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtgc |
39209553 |
T |
|
| Q |
441 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
540 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209554 |
atac----tgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
|
| Q |
541 |
tccctcacactgttttccccttctttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
628 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209650 |
tccctcacactgttttccccttctttatcgtccttcccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
39209737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 176 - 628
Target Start/End: Complemental strand, 27514589 - 27514129
Alignment:
| Q |
176 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
27514589 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaa |
27514490 |
T |
|
| Q |
276 |
atttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgt-accatacattgctcgccatgttggaggatggaaatt |
374 |
Q |
| |
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|| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
27514489 |
tttaattaatgagtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatt |
27514390 |
T |
|
| Q |
375 |
tcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgc |
473 |
Q |
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| T |
27514389 |
tcaaacctgctgcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgc |
27514294 |
T |
|
| Q |
474 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataa----------aggtgtcttctccctcacactgttttccccttc |
563 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
27514293 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcatcaccaacataaatccaaacctaagtgtcttctccctcacactgttttccccttc |
27514194 |
T |
|
| Q |
564 |
tttatcgtcctttccctcacctccttctccttgccaccatccaatcttcttccctttcttctctg |
628 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
27514193 |
tttatcgtcctttccctcacctccttctccttgccaccatccgatcttcttctctttgttctctg |
27514129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 27637577 - 27637431
Alignment:
| Q |
18 |
aagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatat |
117 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27637577 |
aagaagggtattatcgagattcagaattcgatttaaaattgatattactgtcaaaaatgttattacaatagctcatctatgctatgatgattatcaatat |
27637478 |
T |
|
| Q |
118 |
gatatttatgagtttaatttagtttcatggtgtttcatttattttgt |
164 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27637477 |
gatatttatgagtttaatttagtttcatgatgtttcatttattttgt |
27637431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 37353770 - 37353626
Alignment:
| Q |
18 |
aagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatat |
117 |
Q |
| |
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|||||||||||||| |||||||| |||| ||||||| | | |||||| | |||||| ||| ||||| | | | |||| ||||||||||||||||||| |
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| T |
37353770 |
aagaagggtattatcgagattcaaaatttgatttaagattaatattactgtcaaaaaggttggtacaacaactaagctatactatgatgattatcaatat |
37353671 |
T |
|
| Q |
118 |
gatatttatgagtttaatttagtttcatggtgtttcatttatttt |
162 |
Q |
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||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
37353670 |
gatatttatgagtttaatttagtttcatgttgttacttttatttt |
37353626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 37365744 - 37365600
Alignment:
| Q |
18 |
aagaagggtattattgagattcagaattcgatttaaaagtgatattattttcaaaactgttattacaatagatcatctatgctatgatgattatcaatat |
117 |
Q |
| |
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|||||||||||||| |||||||| |||| ||||||| | | |||||| | |||||| ||| ||||| | | | |||| ||||||||||||||||||| |
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| T |
37365744 |
aagaagggtattatcgagattcaaaatttgatttaagattaatattactgtcaaaaaggttggtacaacaactaagctatactatgatgattatcaatat |
37365645 |
T |
|
| Q |
118 |
gatatttatgagtttaatttagtttcatggtgtttcatttatttt |
162 |
Q |
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||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
37365644 |
gatatttatgagtttaatttagtttcatgttgttacttttatttt |
37365600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
193 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
292 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
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| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
|
| Q |
293 |
tgggacaaaattacgttgatacccttat |
320 |
Q |
| |
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|||||||||||||| || |||||||||| |
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| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 36407074 - 36407015
Alignment:
| Q |
177 |
atcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
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|
| T |
36407074 |
atcataatattataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 18449260 - 18449208
Alignment:
| Q |
184 |
tattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
236 |
Q |
| |
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||||||||||||||||| || || ||| ||||||||||||| |||||||||| |
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|
| T |
18449260 |
tattataaatggaacaccaagctccaaatttgccctaatttgctcctttgaaa |
18449208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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